From 9ae42bd20bc2543a94cf1581ba9820c2f9e3afbd Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 20 Apr 2023 19:53:28 +0200 Subject: Fix and rebuild documentation, see NEWS I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well. --- .../figure-html/convergence-saem-dfop-const-1.png | Bin 0 -> 130847 bytes .../figure-html/convergence-saem-dfop-tc-1.png | Bin 0 -> 116026 bytes .../convergence-saem-dfop-tc-no-ranef-k2-1.png | Bin 0 -> 128564 bytes .../figure-html/convergence-saem-fomc-const-1.png | Bin 0 -> 101690 bytes .../figure-html/convergence-saem-fomc-tc-1.png | Bin 0 -> 97397 bytes .../figure-html/convergence-saem-hs-const-1.png | Bin 0 -> 132456 bytes .../figure-html/convergence-saem-hs-tc-1.png | Bin 0 -> 102390 bytes .../figure-html/convergence-saem-sfo-const-1.png | Bin 0 -> 76259 bytes .../figure-html/convergence-saem-sfo-tc-1.png | Bin 0 -> 64271 bytes .../figure-html/multistart-full-par-1.png | Bin 0 -> 72048 bytes .../figure-html/multistart-reduced-par-1.png | Bin 0 -> 66652 bytes .../figure-html/multistart-reduced-par-llquant-1.png | Bin 0 -> 59486 bytes .../figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png | Bin 0 -> 158323 bytes 13 files changed, 0 insertions(+), 0 deletions(-) create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-const-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-no-ranef-k2-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-const-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-tc-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-const-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-tc-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-const-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-tc-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-full-par-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-llquant-1.png create mode 100644 docs/articles/prebuilt/2022_dmta_parent_files/figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png (limited to 'docs/articles/prebuilt/2022_dmta_parent_files') diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-const-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-const-1.png new file mode 100644 index 00000000..3f145074 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-const-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-1.png new file mode 100644 index 00000000..e5457fc9 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-no-ranef-k2-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-no-ranef-k2-1.png new file mode 100644 index 00000000..14707641 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-dfop-tc-no-ranef-k2-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-const-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-const-1.png new file mode 100644 index 00000000..c7ed69a3 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-const-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-tc-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-tc-1.png new file mode 100644 index 00000000..1a48524c Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-fomc-tc-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-const-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-const-1.png new file mode 100644 index 00000000..0f3b1184 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-const-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-tc-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-tc-1.png new file mode 100644 index 00000000..901a1579 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-hs-tc-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-const-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-const-1.png new file mode 100644 index 00000000..a3e3a51f Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-const-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-tc-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-tc-1.png new file mode 100644 index 00000000..b85691eb Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/convergence-saem-sfo-tc-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-full-par-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-full-par-1.png new file mode 100644 index 00000000..a42950f0 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-full-par-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-1.png new file mode 100644 index 00000000..caebc768 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-llquant-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-llquant-1.png new file mode 100644 index 00000000..45ae57f1 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/multistart-reduced-par-llquant-1.png differ diff --git a/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png new file mode 100644 index 00000000..1f8eb9f0 Binary files /dev/null and b/docs/articles/prebuilt/2022_dmta_parent_files/figure-html/plot-saem-dfop-tc-no-ranef-k2-1.png differ -- cgit v1.2.1