From b7901aac76df753ec1213cb02bebea055965ee87 Mon Sep 17 00:00:00 2001 From: Ranke Johannes Date: Mon, 30 Oct 2023 17:09:21 +0100 Subject: Update static docs --- docs/articles/prebuilt/2022_dmta_pathway.html | 65 ++++++++++++++------------- 1 file changed, 34 insertions(+), 31 deletions(-) (limited to 'docs/articles/prebuilt/2022_dmta_pathway.html') diff --git a/docs/articles/prebuilt/2022_dmta_pathway.html b/docs/articles/prebuilt/2022_dmta_pathway.html index ea4bd087..2c3f326a 100644 --- a/docs/articles/prebuilt/2022_dmta_pathway.html +++ b/docs/articles/prebuilt/2022_dmta_pathway.html @@ -33,7 +33,7 @@ mkin - 1.2.4 + 1.2.6 @@ -73,6 +73,9 @@
  • Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P
    • +
  • + Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione +
  • Testing hierarchical pathway kinetics with residue data on cyantraniliprole
    • @@ -135,7 +138,7 @@ residue data on dimethenamid and dimethenamid-P Ranke

    Last change on 20 April 2023, -last compiled on 19 Mai 2023

    +last compiled on 30 October 2023 Source: vignettes/prebuilt/2022_dmta_pathway.rmd @@ -155,7 +158,7 @@ can be fitted with the mkin package.

    173340 (Application of nonlinear hierarchical models to the kinetic evaluation of chemical degradation data) of the German Environment Agency carried out in 2022 and 2023.

    -

    The mkin package is used in version 1.2.4, which is currently under +

    The mkin package is used in version 1.2.6, which is currently under development. It contains the test data, and the functions used in the evaluations. The saemix package is used as a backend for fitting the NLHM, but is also loaded to make the convergence plot @@ -1976,23 +1979,23 @@ error

    Session info

    -
    R version 4.3.0 Patched (2023-05-18 r84448)
+
    R version 4.3.1 (2023-06-16)
 Platform: x86_64-pc-linux-gnu (64-bit)
-Running under: Debian GNU/Linux 12 (bookworm)
+Running under: Ubuntu 22.04.3 LTS
 
 Matrix products: default
-BLAS:   /home/jranke/svn/R/r-patched/build/lib/libRblas.so 
-LAPACK: /usr/lib/x86_64-linux-gnu/openblas-serial/liblapack.so.3;  LAPACK version 3.11.0
+BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 
+LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
 
 locale:
- [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C              
- [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=de_DE.UTF-8    
- [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=de_DE.UTF-8   
- [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                 
+ [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
+ [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
+ [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
+ [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
-[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       
+[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
 
-time zone: Europe/Berlin
+time zone: Europe/Zurich
 tzcode source: system (glibc)
 
 attached base packages:
@@ -2000,31 +2003,31 @@ attached base packages:
 [8] base     
 
 other attached packages:
-[1] saemix_3.2 npde_3.3   knitr_1.42 mkin_1.2.4
+[1] saemix_3.2 npde_3.3   knitr_1.44 mkin_1.2.6
 
 loaded via a namespace (and not attached):
- [1] sass_0.4.6        utf8_1.2.3        generics_0.1.3    stringi_1.7.12   
- [5] lattice_0.21-8    digest_0.6.31     magrittr_2.0.3    evaluate_0.21    
- [9] grid_4.3.0        fastmap_1.1.1     rprojroot_2.0.3   jsonlite_1.8.4   
-[13] processx_3.8.1    pkgbuild_1.4.0    deSolve_1.35      DBI_1.1.3        
-[17] mclust_6.0.0      ps_1.7.5          gridExtra_2.3     purrr_1.0.1      
-[21] fansi_1.0.4       scales_1.2.1      codetools_0.2-19  textshaping_0.3.6
-[25] jquerylib_0.1.4   cli_3.6.1         crayon_1.5.2      rlang_1.1.1      
-[29] munsell_0.5.0     cachem_1.0.8      yaml_2.3.7        inline_0.3.19    
-[33] tools_4.3.0       memoise_2.0.1     dplyr_1.1.2       colorspace_2.1-0 
-[37] ggplot2_3.4.2     vctrs_0.6.2       R6_2.5.1          zoo_1.8-12       
-[41] lifecycle_1.0.3   stringr_1.5.0     fs_1.6.2          ragg_1.2.5       
+ [1] sass_0.4.7        utf8_1.2.3        generics_0.1.3    stringi_1.7.12   
+ [5] lattice_0.21-9    digest_0.6.33     magrittr_2.0.3    evaluate_0.22    
+ [9] grid_4.3.1        fastmap_1.1.1     rprojroot_2.0.3   jsonlite_1.8.7   
+[13] processx_3.8.2    pkgbuild_1.4.2    deSolve_1.35      mclust_6.0.0     
+[17] ps_1.7.5          gridExtra_2.3     purrr_1.0.1       fansi_1.0.4      
+[21] scales_1.2.1      codetools_0.2-19  textshaping_0.3.6 jquerylib_0.1.4  
+[25] cli_3.6.1         crayon_1.5.2      rlang_1.1.1       munsell_0.5.0    
+[29] cachem_1.0.8      yaml_2.3.7        inline_0.3.19     tools_4.3.1      
+[33] memoise_2.0.1     dplyr_1.1.2       colorspace_2.1-0  ggplot2_3.4.2    
+[37] vctrs_0.6.3       R6_2.5.1          zoo_1.8-12        lifecycle_1.0.3  
+[41] stringr_1.5.0     fs_1.6.3          MASS_7.3-60       ragg_1.2.5       
 [45] callr_3.7.3       pkgconfig_2.0.3   desc_1.4.2        pkgdown_2.0.7    
-[49] bslib_0.4.2       pillar_1.9.0      gtable_0.3.3      glue_1.6.2       
-[53] systemfonts_1.0.4 highr_0.10        xfun_0.39         tibble_3.2.1     
-[57] lmtest_0.9-40     tidyselect_1.2.0  htmltools_0.5.5   nlme_3.1-162     
-[61] rmarkdown_2.21    compiler_4.3.0    prettyunits_1.1.1
    
+[49] bslib_0.5.1       pillar_1.9.0      gtable_0.3.3      glue_1.6.2       
+[53] systemfonts_1.0.4 xfun_0.40         tibble_3.2.1      lmtest_0.9-40    
+[57] tidyselect_1.2.0  rstudioapi_0.15.0 htmltools_0.5.6.1 nlme_3.1-163     
+[61] rmarkdown_2.23    compiler_4.3.1    prettyunits_1.2.0

    Hardware info

    -
    CPU model: AMD Ryzen 9 7950X 16-Core Processor
    -
    MemTotal:       64925476 kB
    +
    CPU model: Intel(R) Xeon(R) Gold 6134 CPU @ 3.20GHz
    +
    MemTotal:       247605564 kB
    -- cgit v1.2.1