From 8b7edd4eaf0d196e674a085f744d1a69260a6c91 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 16 Nov 2023 06:02:05 +0100 Subject: Update pkgdown docs to bootstrap 5 with search --- docs/articles/web_only/NAFTA_examples.html | 196 +++++++++++------------------ 1 file changed, 74 insertions(+), 122 deletions(-) (limited to 'docs/articles/web_only/NAFTA_examples.html') diff --git a/docs/articles/web_only/NAFTA_examples.html b/docs/articles/web_only/NAFTA_examples.html index 1c5be845..57b2ed1c 100644 --- a/docs/articles/web_only/NAFTA_examples.html +++ b/docs/articles/web_only/NAFTA_examples.html @@ -4,145 +4,104 @@ - + + Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance • mkin - - - + + + - - + - + + Skip to contents -
-
-
-
-

Evaluation of example datasets from Attachment 1 -to the US EPA SOP for the NAFTA guidance

+ +
+
+

Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance

Johannes Ranke

26 February 2019 (rebuilt -2023-10-30)

+2023-11-16) Source: vignettes/web_only/NAFTA_examples.rmd - - +
NAFTA_examples.rmd
@@ -1079,34 +1038,27 @@ Pesticide Degradation.” - - +
-
- -
- -- cgit v1.2.1 From 6476f5f49b373cd4cf05f2e73389df83e437d597 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 13 Feb 2025 16:30:31 +0100 Subject: Axis legend formatting, update vignettes --- docs/articles/web_only/NAFTA_examples.html | 211 +++++++++++++---------------- 1 file changed, 97 insertions(+), 114 deletions(-) (limited to 'docs/articles/web_only/NAFTA_examples.html') diff --git a/docs/articles/web_only/NAFTA_examples.html b/docs/articles/web_only/NAFTA_examples.html index 57b2ed1c..88551103 100644 --- a/docs/articles/web_only/NAFTA_examples.html +++ b/docs/articles/web_only/NAFTA_examples.html @@ -5,86 +5,71 @@ - Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance • mkin - - - - - - + + + + Skip to contents - - 

 print(p8)
@@ -400,7 +386,7 @@ lower value for the rate constant is used here.

## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
## The half-life obtained from the IORE model may be used
-plot(p9a)
+plot(p9a)

 print(p9a)
@@ -454,7 +440,7 @@ suggest a simple exponential decline.

## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
## The half-life obtained from the IORE model may be used
-plot(p9b)
+plot(p9b) 

 print(p9b)
@@ -512,7 +498,7 @@ in PestDF and g in mkin. In mkin, it is restricted to the interval from 
## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
## The half-life obtained from the IORE model may be used
-plot(p10)
+plot(p10) 

 print(p10)
@@ -572,7 +558,7 @@ difference in IORE model parameters between PestDF and mkin.

## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
## The half-life obtained from the IORE model may be used
-plot(p11)
+plot(p11) 

 print(p11)
@@ -638,7 +624,7 @@ overparameterisation.

## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
## The half-life obtained from the IORE model may be used
-plot(p12a)
+plot(p12a) 

 print(p12a)
@@ -690,15 +676,14 @@ overparameterisation.

## Warning in qt(alpha/2, rdf): NaNs produced
## Warning in qt(1 - alpha/2, rdf): NaNs produced
## Warning in pt(abs(tval), rdf, lower.tail = FALSE): NaNs produced
-
## Warning in sqrt(1/diag(V)): NaNs produced
-
## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result
-## is doubtful
+
## Warning in cov2cor(ans$covar): diag(V) had non-positive or NA entries; the
+## non-finite result may be dubious
## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
## The half-life obtained from the IORE model may be used
-
-plot(p12b)
+
+plot(p12b)

-
+
 print(p12b)

 
## Sums of squares:
 ##      SFO     IORE     DFOP 
@@ -742,14 +727,14 @@ overparameterisation.

 

 
Example on page 13
 

-
+
 p13 <- nafta(NAFTA_SOP_Attachment[["p13"]])

 
## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c

 
## The half-life obtained from the IORE model may be used

-
-plot(p13)

+
+plot(p13)

 

-
+
 print(p13)

 
## Sums of squares:
 ##      SFO     IORE     DFOP 
@@ -794,18 +779,17 @@ overparameterisation.

 

 
DT50 not observed in the study and DFOP problems in PestDF
 

-
+
 p14 <- nafta(NAFTA_SOP_Attachment[["p14"]])

 
## Warning in sqrt(diag(covar)): NaNs produced

-
## Warning in sqrt(1/diag(V)): NaNs produced

-
## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result
-## is doubtful

+
## Warning in cov2cor(ans$covar): diag(V) had non-positive or NA entries; the
+## non-finite result may be dubious

 
## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c

 
## The half-life obtained from the IORE model may be used

-
-plot(p14)

+
+plot(p14)

 

-
+
 print(p14)

 
## Sums of squares:
 ##      SFO     IORE     DFOP 
@@ -852,18 +836,17 @@ same results in mkin and PestDF.

 

 
N is less than 1 and DFOP fraction parameter is below zero
 

-
+
 p15a <- nafta(NAFTA_SOP_Attachment[["p15a"]])

 
## Warning in sqrt(diag(covar)): NaNs produced

-
## Warning in sqrt(1/diag(V)): NaNs produced

-
## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result
-## is doubtful

+
## Warning in cov2cor(ans$covar): diag(V) had non-positive or NA entries; the
+## non-finite result may be dubious

 
## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c

 
## The half-life obtained from the IORE model may be used

-
-plot(p15a)

+
+plot(p15a)

 

-
+
 print(p15a)

 
## Sums of squares:
 ##      SFO     IORE     DFOP 
@@ -903,16 +886,16 @@ same results in mkin and PestDF.

 ## 
 ## Representative half-life:
 ## [1] 41.33

-
+
 p15b <- nafta(NAFTA_SOP_Attachment[["p15b"]])

 
## Warning in summary.mkinfit(x): Could not calculate correlation; no covariance
 ## matrix

 
## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c

 
## The half-life obtained from the IORE model may be used

-
-plot(p15b)

+
+plot(p15b)

 

-
+
 print(p15b)

 
## Sums of squares:
 ##       SFO      IORE      DFOP 
@@ -960,16 +943,16 @@ mkin and PestDF.

 

 
The DFOP fraction parameter is greater than 1
 

-
+
 p16 <- nafta(NAFTA_SOP_Attachment[["p16"]])

 
## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c

 
## The representative half-life of the IORE model is longer than the one corresponding

 
## to the terminal degradation rate found with the DFOP model.

 
## The representative half-life obtained from the DFOP model may be used

-
-plot(p16)

+
+plot(p16)

 

-
+
 print(p16)

 
## Sums of squares:
 ##      SFO     IORE     DFOP 
@@ -1010,10 +993,12 @@ mkin and PestDF.

 ## Representative half-life:
 ## [1] 8.93

 
In PestDF, the DFOP fit seems to have stuck in a local minimum, as
-mkin finds a solution with a much lower \(\chi^2\) error level. As the half-life from
-the slower rate constant of the DFOP model is larger than the IORE
-derived half-life, the NAFTA recommendation obtained with mkin is to use
-the DFOP representative half-life of 8.9 days.

+mkin finds a solution with a much lower
+χ2\chi^2
+error level. As the half-life from the slower rate constant of the DFOP
+model is larger than the IORE derived half-life, the NAFTA
+recommendation obtained with mkin is to use the DFOP representative
+half-life of 8.9 days.

 

 

 
Conclusions
@@ -1038,28 +1023,26 @@ Pesticide Degradation.” 

 
 
 
     
 

 
-  
 
-  
+
+
 
   
 
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