From 95178837d3f91e84837628446b5fd468179af2b9 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 4 Jun 2019 15:09:28 +0200
Subject: Additional algorithm "d_c", more tests, docs

The new algorithm tries direct optimization of the likelihood, as well
as a three step procedure. In this way, we consistently get the
model with the highest likelihood for SFO, DFOP and HS for all 12
new test datasets.
---
 docs/articles/web_only/compiled_models.html | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

(limited to 'docs/articles/web_only/compiled_models.html')

diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index f296c8a4..f3062c66 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -30,7 +30,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.4</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.5</span>
       </span>
     </div>
 
@@ -88,7 +88,7 @@
       <h1>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2019-05-08</h4>
+            <h4 class="date">2019-06-04</h4>
       
       
       <div class="hidden name"><code>compiled_models.Rmd</code></div>
@@ -163,9 +163,9 @@
 ## Warning in mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "deSolve", quiet
 ## = TRUE): Observations with value of zero were removed from the data</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   3.131    1.000     3.129        0
-## 1 deSolve, not compiled            3  28.306    9.041    28.290        0
-## 2      Eigenvalue based            3   4.361    1.393     4.358        0
+## 3     deSolve, compiled            3   3.053    1.000     3.052        0
+## 1 deSolve, not compiled            3  28.457    9.321    28.442        0
+## 2      Eigenvalue based            3   4.296    1.407     4.293        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -214,16 +214,16 @@
 ## Warning in mkinfit(FOMC_SFO, FOCUS_2006_D, quiet = TRUE): Observations with
 ## value of zero were removed from the data</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   5.023    1.000     5.021        0
-## 1 deSolve, not compiled            3  53.267   10.605    53.235        0
+## 2     deSolve, compiled            3   4.828    1.000     4.825        0
+## 1 deSolve, not compiled            3  53.153   11.009    53.125        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0</code></pre>
 <p>Here we get a performance benefit of a factor of 11 using the version of the differential equation model compiled from C code!</p>
-<p>This vignette was built with mkin 0.9.49.4 on</p>
+<p>This vignette was built with mkin 0.9.49.5 on</p>
 <pre><code>## R version 3.6.0 (2019-04-26)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Debian GNU/Linux 9 (stretch)</code></pre>
+## Running under: Debian GNU/Linux 10 (buster)</code></pre>
 <pre><code>## CPU model: AMD Ryzen 7 1700 Eight-Core Processor</code></pre>
 </div>
   </div>
@@ -247,7 +247,7 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
 </div>
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 </div>
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