From a9427a09abdf7ce9aaeae7c7190f90c8f2e5ef52 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Mon, 15 Feb 2021 14:08:13 +0100
Subject: Improve README, introductory vignette and some other docs

Also bump version to 1.0.3.
---
 docs/articles/web_only/compiled_models.html | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

(limited to 'docs/articles/web_only/compiled_models.html')

diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index e45655b6..ce8d8481 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -31,7 +31,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.3</span>
       </span>
     </div>
 
@@ -94,13 +94,13 @@
 
       
 
-      </header><div class="row">
+      </header><script src="compiled_models_files/header-attrs-2.6/header-attrs.js"></script><script src="compiled_models_files/accessible-code-block-0.0.1/empty-anchor.js"></script><div class="row">
   <div class="col-md-9 contents">
     <div class="page-header toc-ignore">
       <h1 data-toc-skip>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2021-02-03</h4>
+            <h4 class="date">2021-02-15</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/master/vignettes/web_only/compiled_models.rmd"><code>vignettes/web_only/compiled_models.rmd</code></a></small>
       <div class="hidden name"><code>compiled_models.rmd</code></div>
@@ -159,9 +159,9 @@
 <span class="op">}</span></code></pre></div>
 <pre><code>##                    test replications relative elapsed
 ## 4            analytical            1    1.000   0.181
-## 3     deSolve, compiled            1    1.818   0.329
-## 2      Eigenvalue based            1    2.061   0.373
-## 1 deSolve, not compiled            1   43.923   7.950</code></pre>
+## 3     deSolve, compiled            1    1.812   0.328
+## 2      Eigenvalue based            1    2.088   0.378
+## 1 deSolve, not compiled            1   45.923   8.312</code></pre>
 <p>We see that using the compiled model is by more than a factor of 10 faster than using deSolve without compiled code.</p>
 </div>
 <div id="model-without-analytical-solution" class="section level2">
@@ -188,13 +188,13 @@
 <span class="op">}</span></code></pre></div>
 <pre><code>## Temporary DLL for differentials generated and loaded</code></pre>
 <pre><code>##                    test replications relative elapsed
-## 2     deSolve, compiled            1    1.000   0.474
-## 1 deSolve, not compiled            1   30.179  14.305</code></pre>
-<p>Here we get a performance benefit of a factor of 30 using the version of the differential equation model compiled from C code!</p>
-<p>This vignette was built with mkin 1.0.0 on</p>
+## 2     deSolve, compiled            1    1.000   0.486
+## 1 deSolve, not compiled            1   31.597  15.356</code></pre>
+<p>Here we get a performance benefit of a factor of 32 using the version of the differential equation model compiled from C code!</p>
+<p>This vignette was built with mkin 1.0.3 on</p>
 <pre><code>## R version 4.0.3 (2020-10-10)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Debian GNU/Linux 10 (buster)</code></pre>
+## Running under: Debian GNU/Linux bullseye/sid</code></pre>
 <pre><code>## CPU model: AMD Ryzen 7 1700 Eight-Core Processor</code></pre>
 </div>
   </div>
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