From 6476f5f49b373cd4cf05f2e73389df83e437d597 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <johannes.ranke@jrwb.de>
Date: Thu, 13 Feb 2025 16:30:31 +0100
Subject: Axis legend formatting, update vignettes

---
 docs/articles/web_only/FOCUS_Z.html                | 128 ++++++-------
 .../accessible-code-block-0.0.1/empty-anchor.js    |  15 --
 .../FOCUS_Z_files/header-attrs-2.6/header-attrs.js |  12 --
 .../FOCUS_Z_files/header-attrs-2.7/header-attrs.js |  12 --
 docs/articles/web_only/NAFTA_examples.html         | 211 ++++++++++-----------
 .../accessible-code-block-0.0.1/empty-anchor.js    |  15 --
 .../header-attrs-2.6/header-attrs.js               |  12 --
 .../header-attrs-2.7/header-attrs.js               |  12 --
 docs/articles/web_only/benchmarks.html             | 149 ++++++++-------
 .../accessible-code-block-0.0.1/empty-anchor.js    |  15 --
 .../header-attrs-2.6/header-attrs.js               |  12 --
 .../header-attrs-2.7/header-attrs.js               |  12 --
 docs/articles/web_only/compiled_models.html        | 138 ++++++--------
 .../accessible-code-block-0.0.1/empty-anchor.js    |  15 --
 .../header-attrs-2.6/header-attrs.js               |  12 --
 docs/articles/web_only/dimethenamid_2018.html      | 210 ++++++++++----------
 .../accessible-code-block-0.0.1/empty-anchor.js    |  15 --
 .../figure-html/f_parent_mkin_dfop_const-1.png     | Bin 57786 -> 57786 bytes
 .../f_parent_mkin_dfop_const_test-1.png            | Bin 57786 -> 57786 bytes
 .../figure-html/f_parent_mkin_dfop_tc_test-1.png   | Bin 59396 -> 59146 bytes
 .../f_parent_nlmixr_saem_dfop_const-1.png          | Bin 94264 -> 0 bytes
 .../figure-html/f_parent_nlmixr_saem_dfop_tc-1.png | Bin 82238 -> 0 bytes
 .../f_parent_nlmixr_saem_dfop_tc_10k-1.png         | Bin 81793 -> 0 bytes
 .../f_parent_nlmixr_saem_dfop_tc_1k-1.png          | Bin 84973 -> 0 bytes
 .../f_parent_nlmixr_saem_sfo_const-1.png           | Bin 71898 -> 0 bytes
 .../figure-html/f_parent_nlmixr_saem_sfo_tc-1.png  | Bin 77093 -> 0 bytes
 .../figure-html/f_parent_saemix_dfop_tc-1.png      | Bin 29299 -> 29343 bytes
 .../figure-html/plot_parent_nlme-1.png             | Bin 59192 -> 59209 bytes
 docs/articles/web_only/mkin_benchmarks.rda         | Bin 1273 -> 0 bytes
 docs/articles/web_only/multistart.html             | 120 +++++-------
 .../accessible-code-block-0.0.1/empty-anchor.js    |  15 --
 .../figure-html/unnamed-chunk-3-1.png              | Bin 65359 -> 62571 bytes
 .../figure-html/unnamed-chunk-4-1.png              | Bin 53645 -> 53560 bytes
 .../figure-html/unnamed-chunk-6-1.png              | Bin 53020 -> 0 bytes
 docs/articles/web_only/saem_benchmarks.html        | 157 ++++++++-------
 .../accessible-code-block-0.0.1/empty-anchor.js    |  15 --
 36 files changed, 537 insertions(+), 765 deletions(-)
 delete mode 100644 docs/articles/web_only/FOCUS_Z_files/accessible-code-block-0.0.1/empty-anchor.js
 delete mode 100644 docs/articles/web_only/FOCUS_Z_files/header-attrs-2.6/header-attrs.js
 delete mode 100644 docs/articles/web_only/FOCUS_Z_files/header-attrs-2.7/header-attrs.js
 delete mode 100644 docs/articles/web_only/NAFTA_examples_files/accessible-code-block-0.0.1/empty-anchor.js
 delete mode 100644 docs/articles/web_only/NAFTA_examples_files/header-attrs-2.6/header-attrs.js
 delete mode 100644 docs/articles/web_only/NAFTA_examples_files/header-attrs-2.7/header-attrs.js
 delete mode 100644 docs/articles/web_only/benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
 delete mode 100644 docs/articles/web_only/benchmarks_files/header-attrs-2.6/header-attrs.js
 delete mode 100644 docs/articles/web_only/benchmarks_files/header-attrs-2.7/header-attrs.js
 delete mode 100644 docs/articles/web_only/compiled_models_files/accessible-code-block-0.0.1/empty-anchor.js
 delete mode 100644 docs/articles/web_only/compiled_models_files/header-attrs-2.6/header-attrs.js
 delete mode 100644 docs/articles/web_only/dimethenamid_2018_files/accessible-code-block-0.0.1/empty-anchor.js
 delete mode 100644 docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_const-1.png
 delete mode 100644 docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc-1.png
 delete mode 100644 docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_10k-1.png
 delete mode 100644 docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_dfop_tc_1k-1.png
 delete mode 100644 docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_const-1.png
 delete mode 100644 docs/articles/web_only/dimethenamid_2018_files/figure-html/f_parent_nlmixr_saem_sfo_tc-1.png
 delete mode 100644 docs/articles/web_only/mkin_benchmarks.rda
 delete mode 100644 docs/articles/web_only/multistart_files/accessible-code-block-0.0.1/empty-anchor.js
 delete mode 100644 docs/articles/web_only/multistart_files/figure-html/unnamed-chunk-6-1.png
 delete mode 100644 docs/articles/web_only/saem_benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js

(limited to 'docs/articles/web_only')

diff --git a/docs/articles/web_only/FOCUS_Z.html b/docs/articles/web_only/FOCUS_Z.html
index 7fd597d2..e91942ce 100644
--- a/docs/articles/web_only/FOCUS_Z.html
+++ b/docs/articles/web_only/FOCUS_Z.html
@@ -5,86 +5,71 @@
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+    <li><a class="dropdown-item" href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a></li>
+    <li><a class="dropdown-item" href="../../articles/web_only/multistart.html">Short demo of the multistart method</a></li>
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+    <li><h6 class="dropdown-header" data-toc-skip>Miscellaneous</h6></li>
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@@ -93,12 +78,13 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Example evaluation of FOCUS dataset Z</h1>
+
+      <h1>Example evaluation of FOCUS dataset Z</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change 16 January 2018
-(rebuilt 2023-11-16)</h4>
+(rebuilt 2025-02-13)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/FOCUS_Z.rmd" class="external-link"><code>vignettes/web_only/FOCUS_Z.rmd</code></a></small>
       <div class="d-none name"><code>FOCUS_Z.rmd</code></div>
@@ -296,9 +282,11 @@ not fitted very well using the SFO model, as residues at a certain low
 level remain.</p>
 <p>Therefore, an additional model is offered here, using the single
 first-order reversible binding (SFORB) model for metabolite Z3. As
-expected, the <span class="math inline">\(\chi^2\)</span> error level is
-lower for metabolite Z3 using this model and the graphical fit for Z3 is
-improved. However, the covariance matrix is not returned.</p>
+expected, the
+<math display="inline" xmlns="http://www.w3.org/1998/Math/MathML"><semantics><msup><mi>χ</mi><mn>2</mn></msup><annotation encoding="application/x-tex">\chi^2</annotation></semantics></math>
+error level is lower for metabolite Z3 using this model and the
+graphical fit for Z3 is improved. However, the covariance matrix is not
+returned.</p>
 <div class="sourceCode" id="cb38"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">Z.mkin.1</span> <span class="op">&lt;-</span> <span class="fu"><a href="../../reference/mkinmod.html">mkinmod</a></span><span class="op">(</span>Z0 <span class="op">=</span> <span class="fu"><a href="../../reference/mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"Z1"</span>, sink <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span>,</span>
 <span>                    Z1 <span class="op">=</span> <span class="fu"><a href="../../reference/mkinmod.html">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"Z2"</span>, sink <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span>,</span>
@@ -432,28 +420,26 @@ Studies on Pesticides in EU Registration</em>. 1.1 ed. <a href="http://esdac.jrc
 </div>
 </div>
 </div>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
     </nav></aside>
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diff --git a/docs/articles/web_only/FOCUS_Z_files/accessible-code-block-0.0.1/empty-anchor.js b/docs/articles/web_only/FOCUS_Z_files/accessible-code-block-0.0.1/empty-anchor.js
deleted file mode 100644
index ca349fd6..00000000
--- a/docs/articles/web_only/FOCUS_Z_files/accessible-code-block-0.0.1/empty-anchor.js
+++ /dev/null
@@ -1,15 +0,0 @@
-// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
-// v0.0.1
-// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
-
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-  }
-});
diff --git a/docs/articles/web_only/FOCUS_Z_files/header-attrs-2.6/header-attrs.js b/docs/articles/web_only/FOCUS_Z_files/header-attrs-2.6/header-attrs.js
deleted file mode 100644
index dd57d92e..00000000
--- a/docs/articles/web_only/FOCUS_Z_files/header-attrs-2.6/header-attrs.js
+++ /dev/null
@@ -1,12 +0,0 @@
-// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
-// be compatible with the behavior of Pandoc < 2.8).
-document.addEventListener('DOMContentLoaded', function(e) {
-  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
-  var i, h, a;
-  for (i = 0; i < hs.length; i++) {
-    h = hs[i];
-    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
-    a = h.attributes;
-    while (a.length > 0) h.removeAttribute(a[0].name);
-  }
-});
diff --git a/docs/articles/web_only/FOCUS_Z_files/header-attrs-2.7/header-attrs.js b/docs/articles/web_only/FOCUS_Z_files/header-attrs-2.7/header-attrs.js
deleted file mode 100644
index dd57d92e..00000000
--- a/docs/articles/web_only/FOCUS_Z_files/header-attrs-2.7/header-attrs.js
+++ /dev/null
@@ -1,12 +0,0 @@
-// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
-// be compatible with the behavior of Pandoc < 2.8).
-document.addEventListener('DOMContentLoaded', function(e) {
-  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
-  var i, h, a;
-  for (i = 0; i < hs.length; i++) {
-    h = hs[i];
-    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
-    a = h.attributes;
-    while (a.length > 0) h.removeAttribute(a[0].name);
-  }
-});
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index 57b2ed1c..88551103 100644
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+    <li><a class="dropdown-item" href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a></li>
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@@ -93,12 +78,13 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance</h1>
+
+      <h1>Evaluation of example datasets from Attachment 1 to the US EPA SOP for the NAFTA guidance</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
             <h4 data-toc-skip class="date">26 February 2019 (rebuilt
-2023-11-16)</h4>
+2025-02-13)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/NAFTA_examples.rmd" class="external-link"><code>vignettes/web_only/NAFTA_examples.rmd</code></a></small>
       <div class="d-none name"><code>NAFTA_examples.rmd</code></div>
@@ -133,7 +119,7 @@ same.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p5a</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p5a</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p5a-1.png" width="700"></p>
 <div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p5a</span><span class="op">)</span></span></code></pre></div>
@@ -184,7 +170,7 @@ same.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb10"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p5b</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p5b</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p5b-1.png" width="700"></p>
 <div class="sourceCode" id="cb11"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p5b</span><span class="op">)</span></span></code></pre></div>
@@ -235,7 +221,7 @@ same.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb16"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p6</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p6</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p6-1.png" width="700"></p>
 <div class="sourceCode" id="cb17"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p6</span><span class="op">)</span></span></code></pre></div>
@@ -286,7 +272,7 @@ same.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb22"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p7</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p7</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p7-1.png" width="700"></p>
 <div class="sourceCode" id="cb23"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p7</span><span class="op">)</span></span></code></pre></div>
@@ -345,7 +331,7 @@ lower value for the rate constant is used here.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb28"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p8</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p8</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p8-1.png" width="700"></p>
 <div class="sourceCode" id="cb29"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p8</span><span class="op">)</span></span></code></pre></div>
@@ -400,7 +386,7 @@ lower value for the rate constant is used here.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb34"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p9a</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p9a</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p9a-1.png" width="700"></p>
 <div class="sourceCode" id="cb35"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p9a</span><span class="op">)</span></span></code></pre></div>
@@ -454,7 +440,7 @@ suggest a simple exponential decline.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb40"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p9b</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p9b</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p9b-1.png" width="700"></p>
 <div class="sourceCode" id="cb41"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p9b</span><span class="op">)</span></span></code></pre></div>
@@ -512,7 +498,7 @@ in PestDF and g in mkin. In mkin, it is restricted to the interval from
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb47"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p10</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p10</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p10-1.png" width="700"></p>
 <div class="sourceCode" id="cb48"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p10</span><span class="op">)</span></span></code></pre></div>
@@ -572,7 +558,7 @@ difference in IORE model parameters between PestDF and mkin.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb53"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p11</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p11</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p11-1.png" width="700"></p>
 <div class="sourceCode" id="cb54"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p11</span><span class="op">)</span></span></code></pre></div>
@@ -638,7 +624,7 @@ overparameterisation.</p>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
 <div class="sourceCode" id="cb61"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p12a</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p12a</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p12a-1.png" width="700"></p>
 <div class="sourceCode" id="cb62"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p12a</span><span class="op">)</span></span></code></pre></div>
@@ -690,15 +676,14 @@ overparameterisation.</p>
 <pre><code><span><span class="co">## Warning in qt(alpha/2, rdf): NaNs produced</span></span></code></pre>
 <pre><code><span><span class="co">## Warning in qt(1 - alpha/2, rdf): NaNs produced</span></span></code></pre>
 <pre><code><span><span class="co">## Warning in pt(abs(tval), rdf, lower.tail = FALSE): NaNs produced</span></span></code></pre>
-<pre><code><span><span class="co">## Warning in sqrt(1/diag(V)): NaNs produced</span></span></code></pre>
-<pre><code><span><span class="co">## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result</span></span>
-<span><span class="co">## is doubtful</span></span></code></pre>
+<pre><code><span><span class="co">## Warning in cov2cor(ans$covar): diag(V) had non-positive or NA entries; the</span></span>
+<span><span class="co">## non-finite result may be dubious</span></span></code></pre>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
-<div class="sourceCode" id="cb73"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p12b</span><span class="op">)</span></span></code></pre></div>
+<div class="sourceCode" id="cb72"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p12b</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p12b-1.png" width="700"></p>
-<div class="sourceCode" id="cb74"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb73"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p12b</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Sums of squares:</span></span>
 <span><span class="co">##      SFO     IORE     DFOP </span></span>
@@ -742,14 +727,14 @@ overparameterisation.</p>
 <div class="section level3">
 <h3 id="example-on-page-13">Example on page 13<a class="anchor" aria-label="anchor" href="#example-on-page-13"></a>
 </h3>
-<div class="sourceCode" id="cb76"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb75"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">p13</span> <span class="op">&lt;-</span> <span class="fu"><a href="../../reference/nafta.html">nafta</a></span><span class="op">(</span><span class="va">NAFTA_SOP_Attachment</span><span class="op">[[</span><span class="st">"p13"</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
-<div class="sourceCode" id="cb79"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p13</span><span class="op">)</span></span></code></pre></div>
+<div class="sourceCode" id="cb78"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p13</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p13-1.png" width="700"></p>
-<div class="sourceCode" id="cb80"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb79"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p13</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Sums of squares:</span></span>
 <span><span class="co">##      SFO     IORE     DFOP </span></span>
@@ -794,18 +779,17 @@ overparameterisation.</p>
 <div class="section level2">
 <h2 id="dt50-not-observed-in-the-study-and-dfop-problems-in-pestdf">DT50 not observed in the study and DFOP problems in PestDF<a class="anchor" aria-label="anchor" href="#dt50-not-observed-in-the-study-and-dfop-problems-in-pestdf"></a>
 </h2>
-<div class="sourceCode" id="cb82"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb81"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">p14</span> <span class="op">&lt;-</span> <span class="fu"><a href="../../reference/nafta.html">nafta</a></span><span class="op">(</span><span class="va">NAFTA_SOP_Attachment</span><span class="op">[[</span><span class="st">"p14"</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Warning in sqrt(diag(covar)): NaNs produced</span></span></code></pre>
-<pre><code><span><span class="co">## Warning in sqrt(1/diag(V)): NaNs produced</span></span></code></pre>
-<pre><code><span><span class="co">## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result</span></span>
-<span><span class="co">## is doubtful</span></span></code></pre>
+<pre><code><span><span class="co">## Warning in cov2cor(ans$covar): diag(V) had non-positive or NA entries; the</span></span>
+<span><span class="co">## non-finite result may be dubious</span></span></code></pre>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
-<div class="sourceCode" id="cb88"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p14</span><span class="op">)</span></span></code></pre></div>
+<div class="sourceCode" id="cb86"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p14</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p14-1.png" width="700"></p>
-<div class="sourceCode" id="cb89"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb87"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p14</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Sums of squares:</span></span>
 <span><span class="co">##      SFO     IORE     DFOP </span></span>
@@ -852,18 +836,17 @@ same results in mkin and PestDF.</p>
 <div class="section level2">
 <h2 id="n-is-less-than-1-and-dfop-fraction-parameter-is-below-zero">N is less than 1 and DFOP fraction parameter is below zero<a class="anchor" aria-label="anchor" href="#n-is-less-than-1-and-dfop-fraction-parameter-is-below-zero"></a>
 </h2>
-<div class="sourceCode" id="cb91"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb89"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">p15a</span> <span class="op">&lt;-</span> <span class="fu"><a href="../../reference/nafta.html">nafta</a></span><span class="op">(</span><span class="va">NAFTA_SOP_Attachment</span><span class="op">[[</span><span class="st">"p15a"</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Warning in sqrt(diag(covar)): NaNs produced</span></span></code></pre>
-<pre><code><span><span class="co">## Warning in sqrt(1/diag(V)): NaNs produced</span></span></code></pre>
-<pre><code><span><span class="co">## Warning in cov2cor(ans$covar): diag(.) had 0 or NA entries; non-finite result</span></span>
-<span><span class="co">## is doubtful</span></span></code></pre>
+<pre><code><span><span class="co">## Warning in cov2cor(ans$covar): diag(V) had non-positive or NA entries; the</span></span>
+<span><span class="co">## non-finite result may be dubious</span></span></code></pre>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
-<div class="sourceCode" id="cb97"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p15a</span><span class="op">)</span></span></code></pre></div>
+<div class="sourceCode" id="cb94"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p15a</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p15a-1.png" width="700"></p>
-<div class="sourceCode" id="cb98"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb95"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p15a</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Sums of squares:</span></span>
 <span><span class="co">##      SFO     IORE     DFOP </span></span>
@@ -903,16 +886,16 @@ same results in mkin and PestDF.</p>
 <span><span class="co">## </span></span>
 <span><span class="co">## Representative half-life:</span></span>
 <span><span class="co">## [1] 41.33</span></span></code></pre>
-<div class="sourceCode" id="cb100"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb97"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">p15b</span> <span class="op">&lt;-</span> <span class="fu"><a href="../../reference/nafta.html">nafta</a></span><span class="op">(</span><span class="va">NAFTA_SOP_Attachment</span><span class="op">[[</span><span class="st">"p15b"</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Warning in summary.mkinfit(x): Could not calculate correlation; no covariance</span></span>
 <span><span class="co">## matrix</span></span></code></pre>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The half-life obtained from the IORE model may be used</span></span></code></pre>
-<div class="sourceCode" id="cb104"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p15b</span><span class="op">)</span></span></code></pre></div>
+<div class="sourceCode" id="cb101"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p15b</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p15b-1.png" width="700"></p>
-<div class="sourceCode" id="cb105"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb102"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p15b</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Sums of squares:</span></span>
 <span><span class="co">##       SFO      IORE      DFOP </span></span>
@@ -960,16 +943,16 @@ mkin and PestDF.</p>
 <div class="section level2">
 <h2 id="the-dfop-fraction-parameter-is-greater-than-1">The DFOP fraction parameter is greater than 1<a class="anchor" aria-label="anchor" href="#the-dfop-fraction-parameter-is-greater-than-1"></a>
 </h2>
-<div class="sourceCode" id="cb107"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb104"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">p16</span> <span class="op">&lt;-</span> <span class="fu"><a href="../../reference/nafta.html">nafta</a></span><span class="op">(</span><span class="va">NAFTA_SOP_Attachment</span><span class="op">[[</span><span class="st">"p16"</span><span class="op">]</span><span class="op">]</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## The SFO model is rejected as S_SFO is equal or higher than the critical value S_c</span></span></code></pre>
 <pre><code><span><span class="co">## The representative half-life of the IORE model is longer than the one corresponding</span></span></code></pre>
 <pre><code><span><span class="co">## to the terminal degradation rate found with the DFOP model.</span></span></code></pre>
 <pre><code><span><span class="co">## The representative half-life obtained from the DFOP model may be used</span></span></code></pre>
-<div class="sourceCode" id="cb112"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p16</span><span class="op">)</span></span></code></pre></div>
+<div class="sourceCode" id="cb109"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">p16</span><span class="op">)</span></span></code></pre></div>
 <p><img src="NAFTA_examples_files/figure-html/p16-1.png" width="700"></p>
-<div class="sourceCode" id="cb113"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb110"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">p16</span><span class="op">)</span></span></code></pre></div>
 <pre><code><span><span class="co">## Sums of squares:</span></span>
 <span><span class="co">##      SFO     IORE     DFOP </span></span>
@@ -1010,10 +993,12 @@ mkin and PestDF.</p>
 <span><span class="co">## Representative half-life:</span></span>
 <span><span class="co">## [1] 8.93</span></span></code></pre>
 <p>In PestDF, the DFOP fit seems to have stuck in a local minimum, as
-mkin finds a solution with a much lower <span class="math inline">\(\chi^2\)</span> error level. As the half-life from
-the slower rate constant of the DFOP model is larger than the IORE
-derived half-life, the NAFTA recommendation obtained with mkin is to use
-the DFOP representative half-life of 8.9 days.</p>
+mkin finds a solution with a much lower
+<math display="inline" xmlns="http://www.w3.org/1998/Math/MathML"><semantics><msup><mi>χ</mi><mn>2</mn></msup><annotation encoding="application/x-tex">\chi^2</annotation></semantics></math>
+error level. As the half-life from the slower rate constant of the DFOP
+model is larger than the IORE derived half-life, the NAFTA
+recommendation obtained with mkin is to use the DFOP representative
+half-life of 8.9 days.</p>
 </div>
 <div class="section level2">
 <h2 id="conclusions">Conclusions<a class="anchor" aria-label="anchor" href="#conclusions"></a>
@@ -1038,28 +1023,26 @@ Pesticide Degradation.”</span> <a href="https://www.epa.gov/pesticide-science-
 </div>
 </div>
 </div>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
     </nav></aside>
 </div>
 
 
 
     <footer><div class="pkgdown-footer-left">
-  <p></p>
-<p>Developed by Johannes Ranke.</p>
+  <p>Developed by Johannes Ranke.</p>
 </div>
 
 <div class="pkgdown-footer-right">
-  <p></p>
-<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
 </div>
 
     </footer>
 </div>
 
-  
 
-  
+
+
 
   </body>
 </html>
diff --git a/docs/articles/web_only/NAFTA_examples_files/accessible-code-block-0.0.1/empty-anchor.js b/docs/articles/web_only/NAFTA_examples_files/accessible-code-block-0.0.1/empty-anchor.js
deleted file mode 100644
index ca349fd6..00000000
--- a/docs/articles/web_only/NAFTA_examples_files/accessible-code-block-0.0.1/empty-anchor.js
+++ /dev/null
@@ -1,15 +0,0 @@
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-// v0.0.1
-// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
-
-document.addEventListener('DOMContentLoaded', function() {
-  const codeList = document.getElementsByClassName("sourceCode");
-  for (var i = 0; i < codeList.length; i++) {
-    var linkList = codeList[i].getElementsByTagName('a');
-    for (var j = 0; j < linkList.length; j++) {
-      if (linkList[j].innerHTML === "") {
-        linkList[j].setAttribute('aria-hidden', 'true');
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-});
diff --git a/docs/articles/web_only/NAFTA_examples_files/header-attrs-2.6/header-attrs.js b/docs/articles/web_only/NAFTA_examples_files/header-attrs-2.6/header-attrs.js
deleted file mode 100644
index dd57d92e..00000000
--- a/docs/articles/web_only/NAFTA_examples_files/header-attrs-2.6/header-attrs.js
+++ /dev/null
@@ -1,12 +0,0 @@
-// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
-// be compatible with the behavior of Pandoc < 2.8).
-document.addEventListener('DOMContentLoaded', function(e) {
-  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
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-  }
-});
diff --git a/docs/articles/web_only/NAFTA_examples_files/header-attrs-2.7/header-attrs.js b/docs/articles/web_only/NAFTA_examples_files/header-attrs-2.7/header-attrs.js
deleted file mode 100644
index dd57d92e..00000000
--- a/docs/articles/web_only/NAFTA_examples_files/header-attrs-2.7/header-attrs.js
+++ /dev/null
@@ -1,12 +0,0 @@
-// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
-// be compatible with the behavior of Pandoc < 2.8).
-document.addEventListener('DOMContentLoaded', function(e) {
-  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
-  var i, h, a;
-  for (i = 0; i < hs.length; i++) {
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diff --git a/docs/articles/web_only/benchmarks.html b/docs/articles/web_only/benchmarks.html
index 17c2f8d8..3566be42 100644
--- a/docs/articles/web_only/benchmarks.html
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@@ -5,86 +5,71 @@
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+    <li><a class="dropdown-item" href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a></li>
+    <li><a class="dropdown-item" href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a></li>
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+    <li><a class="dropdown-item" href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a></li>
+    <li><a class="dropdown-item" href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a></li>
+    <li><a class="dropdown-item" href="../../articles/web_only/multistart.html">Short demo of the multistart method</a></li>
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+    <li><a class="dropdown-item" href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a></li>
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@@ -93,12 +78,13 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Benchmark timings for mkin</h1>
+
+      <h1>Benchmark timings for mkin</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change 17 February 2023
-(rebuilt 2023-11-16)</h4>
+(rebuilt 2025-02-13)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/benchmarks.rmd" class="external-link"><code>vignettes/web_only/benchmarks.rmd</code></a></small>
       <div class="d-none name"><code>benchmarks.rmd</code></div>
@@ -428,6 +414,14 @@ models fitted to two datasets, i.e. eight fits for each test.</p>
 <td align="right">1.408</td>
 <td align="right">2.041</td>
 </tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.4.2</td>
+<td align="left">1.2.9</td>
+<td align="right">1.323</td>
+<td align="right">1.925</td>
+</tr>
 </tbody>
 </table>
 </div>
@@ -700,6 +694,15 @@ for each test.</p>
 <td align="right">2.228</td>
 <td align="right">1.178</td>
 </tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.4.2</td>
+<td align="left">1.2.9</td>
+<td align="right">0.754</td>
+<td align="right">2.153</td>
+<td align="right">1.139</td>
+</tr>
 </tbody>
 </table>
 </div>
@@ -1059,32 +1062,42 @@ dataset, i.e. one fit for each test.</p>
 <td align="right">0.749</td>
 <td align="right">0.999</td>
 </tr>
+<tr class="even">
+<td align="left">Linux</td>
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">4.4.2</td>
+<td align="left">1.2.9</td>
+<td align="right">0.424</td>
+<td align="right">0.534</td>
+<td align="right">0.560</td>
+<td align="right">1.298</td>
+<td align="right">0.735</td>
+<td align="right">0.981</td>
+</tr>
 </tbody>
 </table>
 </div>
 </div>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
     </nav></aside>
 </div>
 
 
 
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-<p>Developed by Johannes Ranke.</p>
+  <p>Developed by Johannes Ranke.</p>
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deleted file mode 100644
index ca349fd6..00000000
--- a/docs/articles/web_only/benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
+++ /dev/null
@@ -1,15 +0,0 @@
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-// v0.0.1
-// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
-
-document.addEventListener('DOMContentLoaded', function() {
-  const codeList = document.getElementsByClassName("sourceCode");
-  for (var i = 0; i < codeList.length; i++) {
-    var linkList = codeList[i].getElementsByTagName('a');
-    for (var j = 0; j < linkList.length; j++) {
-      if (linkList[j].innerHTML === "") {
-        linkList[j].setAttribute('aria-hidden', 'true');
-      }
-    }
-  }
-});
diff --git a/docs/articles/web_only/benchmarks_files/header-attrs-2.6/header-attrs.js b/docs/articles/web_only/benchmarks_files/header-attrs-2.6/header-attrs.js
deleted file mode 100644
index dd57d92e..00000000
--- a/docs/articles/web_only/benchmarks_files/header-attrs-2.6/header-attrs.js
+++ /dev/null
@@ -1,12 +0,0 @@
-// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
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-  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
-  var i, h, a;
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-    a = h.attributes;
-    while (a.length > 0) h.removeAttribute(a[0].name);
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diff --git a/docs/articles/web_only/benchmarks_files/header-attrs-2.7/header-attrs.js b/docs/articles/web_only/benchmarks_files/header-attrs-2.7/header-attrs.js
deleted file mode 100644
index dd57d92e..00000000
--- a/docs/articles/web_only/benchmarks_files/header-attrs-2.7/header-attrs.js
+++ /dev/null
@@ -1,12 +0,0 @@
-// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
-// be compatible with the behavior of Pandoc < 2.8).
-document.addEventListener('DOMContentLoaded', function(e) {
-  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
-  var i, h, a;
-  for (i = 0; i < hs.length; i++) {
-    h = hs[i];
-    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
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diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 210ddaf7..bbf6e897 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -5,86 +5,71 @@
 <meta charset="utf-8">
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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 <title>Performance benefit by using compiled model definitions in mkin • mkin</title>
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@@ -93,11 +78,12 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Performance benefit by using compiled model definitions in mkin</h1>
+
+      <h1>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
-            <h4 data-toc-skip class="date">2023-11-16</h4>
+            <h4 data-toc-skip class="date">2025-02-13</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/compiled_models.rmd" class="external-link"><code>vignettes/web_only/compiled_models.rmd</code></a></small>
       <div class="d-none name"><code>compiled_models.rmd</code></div>
@@ -175,10 +161,10 @@ solution is also implemented, which is included in the tests below.</p>
 <span>  <span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="st">"R package rbenchmark is not available"</span><span class="op">)</span></span>
 <span><span class="op">}</span></span></code></pre></div>
 <pre><code><span><span class="co">##                    test replications relative elapsed</span></span>
-<span><span class="co">## 4            analytical            1    1.000   0.109</span></span>
-<span><span class="co">## 3     deSolve, compiled            1    1.284   0.140</span></span>
-<span><span class="co">## 2      Eigenvalue based            1    1.670   0.182</span></span>
-<span><span class="co">## 1 deSolve, not compiled            1   21.927   2.390</span></span></code></pre>
+<span><span class="co">## 4            analytical            1    1.000   0.105</span></span>
+<span><span class="co">## 3     deSolve, compiled            1    1.333   0.140</span></span>
+<span><span class="co">## 2      Eigenvalue based            1    1.667   0.175</span></span>
+<span><span class="co">## 1 deSolve, not compiled            1   22.486   2.361</span></span></code></pre>
 <p>We see that using the compiled model is by more than a factor of 10
 faster than using deSolve without compiled code.</p>
 </div>
@@ -209,38 +195,36 @@ compiled code is available.</p>
 <span><span class="op">}</span></span></code></pre></div>
 <pre><code><span><span class="co">## Temporary DLL for differentials generated and loaded</span></span></code></pre>
 <pre><code><span><span class="co">##                    test replications relative elapsed</span></span>
-<span><span class="co">## 2     deSolve, compiled            1    1.000   0.181</span></span>
-<span><span class="co">## 1 deSolve, not compiled            1   23.646   4.280</span></span></code></pre>
+<span><span class="co">## 2     deSolve, compiled            1    1.000   0.175</span></span>
+<span><span class="co">## 1 deSolve, not compiled            1   23.937   4.189</span></span></code></pre>
 <p>Here we get a performance benefit of a factor of 24 using the version
 of the differential equation model compiled from C code!</p>
-<p>This vignette was built with mkin 1.2.6 on</p>
-<pre><code><span><span class="co">## R version 4.3.2 (2023-10-31)</span></span>
-<span><span class="co">## Platform: x86_64-pc-linux-gnu (64-bit)</span></span>
+<p>This vignette was built with mkin 1.2.9 on</p>
+<pre><code><span><span class="co">## R version 4.4.2 (2024-10-31)</span></span>
+<span><span class="co">## Platform: x86_64-pc-linux-gnu</span></span>
 <span><span class="co">## Running under: Debian GNU/Linux 12 (bookworm)</span></span></code></pre>
 <pre><code><span><span class="co">## CPU model: AMD Ryzen 9 7950X 16-Core Processor</span></span></code></pre>
 </div>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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deleted file mode 100644
index ca349fd6..00000000
--- a/docs/articles/web_only/compiled_models_files/accessible-code-block-0.0.1/empty-anchor.js
+++ /dev/null
@@ -1,15 +0,0 @@
-// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
-// v0.0.1
-// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
-
-document.addEventListener('DOMContentLoaded', function() {
-  const codeList = document.getElementsByClassName("sourceCode");
-  for (var i = 0; i < codeList.length; i++) {
-    var linkList = codeList[i].getElementsByTagName('a');
-    for (var j = 0; j < linkList.length; j++) {
-      if (linkList[j].innerHTML === "") {
-        linkList[j].setAttribute('aria-hidden', 'true');
-      }
-    }
-  }
-});
diff --git a/docs/articles/web_only/compiled_models_files/header-attrs-2.6/header-attrs.js b/docs/articles/web_only/compiled_models_files/header-attrs-2.6/header-attrs.js
deleted file mode 100644
index dd57d92e..00000000
--- a/docs/articles/web_only/compiled_models_files/header-attrs-2.6/header-attrs.js
+++ /dev/null
@@ -1,12 +0,0 @@
-// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
-// be compatible with the behavior of Pandoc < 2.8).
-document.addEventListener('DOMContentLoaded', function(e) {
-  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
-  var i, h, a;
-  for (i = 0; i < hs.length; i++) {
-    h = hs[i];
-    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
-    a = h.attributes;
-    while (a.length > 0) h.removeAttribute(a[0].name);
-  }
-});
diff --git a/docs/articles/web_only/dimethenamid_2018.html b/docs/articles/web_only/dimethenamid_2018.html
index 4221ba07..5d39704d 100644
--- a/docs/articles/web_only/dimethenamid_2018.html
+++ b/docs/articles/web_only/dimethenamid_2018.html
@@ -5,86 +5,71 @@
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@@ -93,12 +78,13 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Example evaluations of the dimethenamid data from 2018</h1>
+
+      <h1>Example evaluations of the dimethenamid data from 2018</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change 1 July 2022,
-built on 16 Nov 2023</h4>
+built on 13 Feb 2025</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/dimethenamid_2018.rmd" class="external-link"><code>vignettes/web_only/dimethenamid_2018.rmd</code></a></small>
       <div class="d-none name"><code>dimethenamid_2018.rmd</code></div>
@@ -184,12 +170,12 @@ least in some datasets the degradation slows down towards later time
 points, and that the scatter of the residuals error is smaller for
 smaller values (panel to the right):</p>
 <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"SFO"</span>, <span class="op">]</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"SFO"</span>, <span class="op">]</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/f_parent_mkin_sfo_const-1.png" width="700"></p>
 <p>Using biexponential decline (DFOP) results in a slightly more random
 scatter of the residuals:</p>
 <div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const-1.png" width="700"></p>
 <p>The population curve (bold line) in the above plot results from
 taking the mean of the individual transformed parameters, i.e. of log k1
@@ -201,7 +187,7 @@ dominates the average. This is alleviated if only rate constants that
 pass the t-test for significant difference from zero (on the
 untransformed scale) are considered in the averaging:</p>
 <div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span><span class="op">)</span>, test_log_parms <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span><span class="op">)</span>, test_log_parms <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_const_test-1.png" width="700"></p>
 <p>While this is visually much more satisfactory, such an average
 procedure could introduce a bias, as not all results from the individual
@@ -213,7 +199,7 @@ degradation model and the error model (see below).</p>
 predicted residues is reduced by using the two-component error
 model:</p>
 <div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_tc</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span><span class="op">)</span>, test_log_parms <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="fu"><a href="../../reference/mixed.html">mixed</a></span><span class="op">(</span><span class="va">f_parent_mkin_tc</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span><span class="op">)</span>, test_log_parms <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/f_parent_mkin_dfop_tc_test-1.png" width="700"></p>
 <p>However, note that in the case of using this error model, the fits to
 the Flaach and BBA 2.3 datasets appear to be ill-defined, indicated by
@@ -303,7 +289,7 @@ effects does not improve the fits.</p>
 <p>The selected model (DFOP with two-component error) fitted to the data
 assuming no correlations between random effects is shown below.</p>
 <div class="sourceCode" id="cb13"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_parent_nlme_dfop_tc</span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_parent_nlme_dfop_tc</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/plot_parent_nlme-1.png" width="700"></p>
 </div>
 <div class="section level4">
@@ -320,8 +306,17 @@ implemented in the saemix package, the convergence plots need to be
 manually checked for every fit. We define control settings that work
 well for all the parent data fits shown in this vignette.</p>
 <div class="sourceCode" id="cb14"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va">saemix</span><span class="op">)</span></span>
-<span><span class="va">saemix_control</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/pkg/saemix/man/saemixControl.html" class="external-link">saemixControl</a></span><span class="op">(</span>nbiter.saemix <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">800</span>, <span class="fl">300</span><span class="op">)</span>, nb.chains <span class="op">=</span> <span class="fl">15</span>,</span>
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va">saemix</span><span class="op">)</span></span></code></pre></div>
+<pre><code>Loading required package: npde</code></pre>
+<pre><code>Package saemix, version 3.3, March 2024
+  please direct bugs, questions and feedback to emmanuelle.comets@inserm.fr</code></pre>
+<pre><code>
+Attaching package: 'saemix'</code></pre>
+<pre><code>The following objects are masked from 'package:npde':
+
+    kurtosis, skewness</code></pre>
+<div class="sourceCode" id="cb19"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="va">saemix_control</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/pkg/saemix/man/saemixControl.html" class="external-link">saemixControl</a></span><span class="op">(</span>nbiter.saemix <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">800</span>, <span class="fl">300</span><span class="op">)</span>, nb.chains <span class="op">=</span> <span class="fl">15</span>,</span>
 <span>    print <span class="op">=</span> <span class="cn">FALSE</span>, save <span class="op">=</span> <span class="cn">FALSE</span>, save.graphs <span class="op">=</span> <span class="cn">FALSE</span>, displayProgress <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span>
 <span><span class="va">saemix_control_moreiter</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/pkg/saemix/man/saemixControl.html" class="external-link">saemixControl</a></span><span class="op">(</span>nbiter.saemix <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1600</span>, <span class="fl">300</span><span class="op">)</span>, nb.chains <span class="op">=</span> <span class="fl">15</span>,</span>
 <span>    print <span class="op">=</span> <span class="cn">FALSE</span>, save <span class="op">=</span> <span class="cn">FALSE</span>, save.graphs <span class="op">=</span> <span class="cn">FALSE</span>, displayProgress <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span>
@@ -329,7 +324,7 @@ well for all the parent data fits shown in this vignette.</p>
 <span>    print <span class="op">=</span> <span class="cn">FALSE</span>, save <span class="op">=</span> <span class="cn">FALSE</span>, save.graphs <span class="op">=</span> <span class="cn">FALSE</span>, displayProgress <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
 <p>The convergence plot for the SFO model using constant variance is
 shown below.</p>
-<div class="sourceCode" id="cb15"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb20"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">f_parent_saemix_sfo_const</span> <span class="op">&lt;-</span> <span class="fu">mkin</span><span class="fu">::</span><span class="fu"><a href="../../reference/saem.html">saem</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"SFO"</span>, <span class="op">]</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>,</span>
 <span>  control <span class="op">=</span> <span class="va">saemix_control</span>, transformations <span class="op">=</span> <span class="st">"saemix"</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_parent_saemix_sfo_const</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"convergence"</span><span class="op">)</span></span></code></pre></div>
@@ -337,19 +332,19 @@ shown below.</p>
 <p>Obviously the selected number of iterations is sufficient to reach
 convergence. This can also be said for the SFO fit using the
 two-component error model.</p>
-<div class="sourceCode" id="cb16"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb21"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">f_parent_saemix_sfo_tc</span> <span class="op">&lt;-</span> <span class="fu">mkin</span><span class="fu">::</span><span class="fu"><a href="../../reference/saem.html">saem</a></span><span class="op">(</span><span class="va">f_parent_mkin_tc</span><span class="op">[</span><span class="st">"SFO"</span>, <span class="op">]</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>,</span>
 <span>  control <span class="op">=</span> <span class="va">saemix_control</span>, transformations <span class="op">=</span> <span class="st">"saemix"</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_parent_saemix_sfo_tc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"convergence"</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/f_parent_saemix_sfo_tc-1.png" width="700"></p>
 <p>When fitting the DFOP model with constant variance (see below),
 parameter convergence is not as unambiguous.</p>
-<div class="sourceCode" id="cb17"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb22"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">f_parent_saemix_dfop_const</span> <span class="op">&lt;-</span> <span class="fu">mkin</span><span class="fu">::</span><span class="fu"><a href="../../reference/saem.html">saem</a></span><span class="op">(</span><span class="va">f_parent_mkin_const</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>,</span>
 <span>  control <span class="op">=</span> <span class="va">saemix_control</span>, transformations <span class="op">=</span> <span class="st">"saemix"</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_parent_saemix_dfop_const</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"convergence"</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_const-1.png" width="700"></p>
-<div class="sourceCode" id="cb18"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb23"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">f_parent_saemix_dfop_const</span><span class="op">)</span></span></code></pre></div>
 <pre><code>Kinetic nonlinear mixed-effects model fit by SAEM
 Structural model:
@@ -385,14 +380,14 @@ this model.</p>
 also observe that the estimated variance of k2 becomes very small, while
 being ill-defined, as illustrated by the excessive confidence interval
 of <code>SD.k2</code>.</p>
-<div class="sourceCode" id="cb20"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb25"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">f_parent_saemix_dfop_tc</span> <span class="op">&lt;-</span> <span class="fu">mkin</span><span class="fu">::</span><span class="fu"><a href="../../reference/saem.html">saem</a></span><span class="op">(</span><span class="va">f_parent_mkin_tc</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>,</span>
 <span>  control <span class="op">=</span> <span class="va">saemix_control</span>, transformations <span class="op">=</span> <span class="st">"saemix"</span><span class="op">)</span></span>
 <span><span class="va">f_parent_saemix_dfop_tc_moreiter</span> <span class="op">&lt;-</span> <span class="fu">mkin</span><span class="fu">::</span><span class="fu"><a href="../../reference/saem.html">saem</a></span><span class="op">(</span><span class="va">f_parent_mkin_tc</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span>,</span>
 <span>  control <span class="op">=</span> <span class="va">saemix_control_moreiter</span>, transformations <span class="op">=</span> <span class="st">"saemix"</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/plot.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">f_parent_saemix_dfop_tc</span><span class="op">$</span><span class="va">so</span>, plot.type <span class="op">=</span> <span class="st">"convergence"</span><span class="op">)</span></span></code></pre></div>
 <p><img src="dimethenamid_2018_files/figure-html/f_parent_saemix_dfop_tc-1.png" width="700"></p>
-<div class="sourceCode" id="cb21"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb26"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">f_parent_saemix_dfop_tc</span><span class="op">)</span></span></code></pre></div>
 <pre><code>Kinetic nonlinear mixed-effects model fit by SAEM
 Structural model:
@@ -413,11 +408,11 @@ DMTA_0    98.24165  96.29190 100.1914
 k1         0.06421   0.03352   0.0949
 k2         0.00866   0.00617   0.0111
 g          0.95340   0.91218   0.9946
-a.1        1.06463   0.86503   1.2642
-b.1        0.02964   0.02259   0.0367
-SD.DMTA_0  2.03611   0.40416   3.6681
+a.1        1.06463   0.87979   1.2495
+b.1        0.02964   0.02266   0.0366
+SD.DMTA_0  2.03611   0.40361   3.6686
 SD.k1      0.59534   0.25692   0.9338
-SD.k2      0.00042 -73.01372  73.0146
+SD.k2      0.00042 -73.00540  73.0062
 SD.g       1.04234   0.37189   1.7128</code></pre>
 <p>Doubling the number of iterations in the first phase of the algorithm
 leads to a slightly lower likelihood, and therefore to slightly higher
@@ -434,7 +429,7 @@ message.</p>
 <p>The four combinations (SFO/const, SFO/tc, DFOP/const and DFOP/tc) and
 the version with increased iterations can be compared using the model
 comparison function of the saemix package:</p>
-<div class="sourceCode" id="cb23"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb28"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">AIC_parent_saemix</span> <span class="op">&lt;-</span> <span class="fu">saemix</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/compare.saemix.html" class="external-link">compare.saemix</a></span><span class="op">(</span></span>
 <span>  <span class="va">f_parent_saemix_sfo_const</span><span class="op">$</span><span class="va">so</span>,</span>
 <span>  <span class="va">f_parent_saemix_sfo_tc</span><span class="op">$</span><span class="va">so</span>,</span>
@@ -442,7 +437,7 @@ comparison function of the saemix package:</p>
 <span>  <span class="va">f_parent_saemix_dfop_tc</span><span class="op">$</span><span class="va">so</span>,</span>
 <span>  <span class="va">f_parent_saemix_dfop_tc_moreiter</span><span class="op">$</span><span class="va">so</span><span class="op">)</span></span></code></pre></div>
 <pre><code>Likelihoods calculated by importance sampling</code></pre>
-<div class="sourceCode" id="cb25"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb30"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/colnames.html" class="external-link">rownames</a></span><span class="op">(</span><span class="va">AIC_parent_saemix</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span>
 <span>  <span class="st">"SFO const"</span>, <span class="st">"SFO tc"</span>, <span class="st">"DFOP const"</span>, <span class="st">"DFOP tc"</span>, <span class="st">"DFOP tc more iterations"</span><span class="op">)</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">AIC_parent_saemix</span><span class="op">)</span></span></code></pre></div>
@@ -456,7 +451,7 @@ DFOP tc more iterations 665.85 663.76</code></pre>
 algorithms implemented in saemix, the likelihood from Gaussian
 quadrature is added to the best fit, and the AIC values obtained from
 the three methods are compared.</p>
-<div class="sourceCode" id="cb27"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb32"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">f_parent_saemix_dfop_tc</span><span class="op">$</span><span class="va">so</span> <span class="op">&lt;-</span></span>
 <span>  <span class="fu">saemix</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/llgq.saemix.html" class="external-link">llgq.saemix</a></span><span class="op">(</span><span class="va">f_parent_saemix_dfop_tc</span><span class="op">$</span><span class="va">so</span><span class="op">)</span></span>
 <span><span class="va">AIC_parent_saemix_methods</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span>
@@ -480,7 +475,7 @@ iterations makes a lot of difference. When using the LAPACK version
 coming with Debian Bullseye, the AIC based on Gaussian quadrature is
 almost the same as the one obtained with the other methods, also when
 using defaults for the fit.</p>
-<div class="sourceCode" id="cb29"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb34"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">f_parent_saemix_dfop_tc_defaults</span> <span class="op">&lt;-</span> <span class="fu">mkin</span><span class="fu">::</span><span class="fu"><a href="../../reference/saem.html">saem</a></span><span class="op">(</span><span class="va">f_parent_mkin_tc</span><span class="op">[</span><span class="st">"DFOP"</span>, <span class="op">]</span><span class="op">)</span></span>
 <span><span class="va">f_parent_saemix_dfop_tc_defaults</span><span class="op">$</span><span class="va">so</span> <span class="op">&lt;-</span></span>
 <span>  <span class="fu">saemix</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/saemix/man/llgq.saemix.html" class="external-link">llgq.saemix</a></span><span class="op">(</span><span class="va">f_parent_saemix_dfop_tc_defaults</span><span class="op">$</span><span class="va">so</span><span class="op">)</span></span>
@@ -500,7 +495,7 @@ using defaults for the fit.</p>
 <p>The following table gives the AIC values obtained with both backend
 packages using the same control parameters (800 iterations burn-in, 300
 iterations second phase, 15 chains).</p>
-<div class="sourceCode" id="cb31"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb36"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">AIC_all</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span></span>
 <span>  check.names <span class="op">=</span> <span class="cn">FALSE</span>,</span>
 <span>  <span class="st">"Degradation model"</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"SFO"</span>, <span class="st">"SFO"</span>, <span class="st">"DFOP"</span>, <span class="st">"DFOP"</span><span class="op">)</span>,</span>
@@ -511,7 +506,7 @@ iterations second phase, 15 chains).</p>
 <span>  saemix_is <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">sapply</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="va">f_parent_saemix_sfo_const</span><span class="op">$</span><span class="va">so</span>, <span class="va">f_parent_saemix_sfo_tc</span><span class="op">$</span><span class="va">so</span>,</span>
 <span>    <span class="va">f_parent_saemix_dfop_const</span><span class="op">$</span><span class="va">so</span>, <span class="va">f_parent_saemix_dfop_tc</span><span class="op">$</span><span class="va">so</span><span class="op">)</span>, <span class="va">AIC</span>, method <span class="op">=</span> <span class="st">"is"</span><span class="op">)</span></span>
 <span><span class="op">)</span></span>
-<span><span class="fu"><a href="https://rdrr.io/pkg/knitr/man/kable.html" class="external-link">kable</a></span><span class="op">(</span><span class="va">AIC_all</span><span class="op">)</span></span></code></pre></div>
+<span><span class="fu">kable</span><span class="op">(</span><span class="va">AIC_all</span><span class="op">)</span></span></code></pre></div>
 <table class="table">
 <thead><tr class="header">
 <th align="left">Degradation model</th>
@@ -574,10 +569,10 @@ satisfactory precision.</p>
 <div class="section level2">
 <h2 id="session-info">Session Info<a class="anchor" aria-label="anchor" href="#session-info"></a>
 </h2>
-<div class="sourceCode" id="cb32"><pre class="downlit sourceCode r">
+<div class="sourceCode" id="cb37"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/sessionInfo.html" class="external-link">sessionInfo</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
-<pre><code>R version 4.3.2 (2023-10-31)
-Platform: x86_64-pc-linux-gnu (64-bit)
+<pre><code>R version 4.4.2 (2024-10-31)
+Platform: x86_64-pc-linux-gnu
 Running under: Debian GNU/Linux 12 (bookworm)
 
 Matrix products: default
@@ -599,23 +594,22 @@ attached base packages:
 [1] stats     graphics  grDevices utils     datasets  methods   base     
 
 other attached packages:
-[1] saemix_3.2   npde_3.3     nlme_3.1-163 mkin_1.2.6   knitr_1.42  
+[1] saemix_3.3   npde_3.5     nlme_3.1-166 mkin_1.2.9   knitr_1.49  
 
 loaded via a namespace (and not attached):
- [1] sass_0.4.6        utf8_1.2.3        generics_0.1.3    stringi_1.7.12   
- [5] lattice_0.21-8    digest_0.6.31     magrittr_2.0.3    evaluate_0.21    
- [9] grid_4.3.2        fastmap_1.1.1     rprojroot_2.0.3   jsonlite_1.8.4   
-[13] DBI_1.1.3         mclust_6.0.0      gridExtra_2.3     purrr_1.0.1      
-[17] fansi_1.0.4       scales_1.2.1      codetools_0.2-19  textshaping_0.3.6
-[21] jquerylib_0.1.4   cli_3.6.1         rlang_1.1.1       munsell_0.5.0    
-[25] cachem_1.0.8      yaml_2.3.7        tools_4.3.2       parallel_4.3.2   
-[29] memoise_2.0.1     dplyr_1.1.2       colorspace_2.1-0  ggplot2_3.4.2    
-[33] vctrs_0.6.2       R6_2.5.1          zoo_1.8-12        lifecycle_1.0.3  
-[37] stringr_1.5.0     fs_1.6.2          MASS_7.3-60       ragg_1.2.5       
-[41] pkgconfig_2.0.3   desc_1.4.2        pkgdown_2.0.7     bslib_0.4.2      
-[45] pillar_1.9.0      gtable_0.3.3      glue_1.6.2        systemfonts_1.0.4
-[49] highr_0.10        xfun_0.39         tibble_3.2.1      lmtest_0.9-40    
-[53] tidyselect_1.2.0  htmltools_0.5.5   rmarkdown_2.21    compiler_4.3.2   </code></pre>
+ [1] gtable_0.3.6      jsonlite_1.8.9    dplyr_1.1.4       compiler_4.4.2   
+ [5] tidyselect_1.2.1  parallel_4.4.2    gridExtra_2.3     jquerylib_0.1.4  
+ [9] systemfonts_1.1.0 scales_1.3.0      textshaping_0.4.1 yaml_2.3.10      
+[13] fastmap_1.2.0     lattice_0.22-6    ggplot2_3.5.1     R6_2.5.1         
+[17] generics_0.1.3    lmtest_0.9-40     MASS_7.3-61       htmlwidgets_1.6.4
+[21] tibble_3.2.1      desc_1.4.3        munsell_0.5.1     bslib_0.8.0      
+[25] pillar_1.9.0      rlang_1.1.4       utf8_1.2.4        cachem_1.1.0     
+[29] xfun_0.49         fs_1.6.5          sass_0.4.9        cli_3.6.3        
+[33] pkgdown_2.1.1     magrittr_2.0.3    digest_0.6.37     grid_4.4.2       
+[37] mclust_6.1.1      lifecycle_1.0.4   vctrs_0.6.5       evaluate_1.0.1   
+[41] glue_1.8.0        codetools_0.2-20  ragg_1.3.3        zoo_1.8-12       
+[45] fansi_1.0.6       colorspace_2.1-1  rmarkdown_2.29    pkgconfig_2.0.3  
+[49] tools_4.4.2       htmltools_0.5.8.1</code></pre>
 </div>
 <div class="section level2">
 <h2 id="references">References<a class="anchor" aria-label="anchor" href="#references"></a>
@@ -640,28 +634,26 @@ November 2017</span>.”</span> <a href="https://open.efsa.europa.eu/study-inven
 </div>
 </div>
 </div>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
     </nav></aside>
 </div>
 
 
 
     <footer><div class="pkgdown-footer-left">
-  <p></p>
-<p>Developed by Johannes Ranke.</p>
+  <p>Developed by Johannes Ranke.</p>
 </div>
 
 <div class="pkgdown-footer-right">
-  <p></p>
-<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
 </div>
 
     </footer>
 </div>
 
-  
 
-  
+
+
 
   </body>
 </html>
diff --git a/docs/articles/web_only/dimethenamid_2018_files/accessible-code-block-0.0.1/empty-anchor.js b/docs/articles/web_only/dimethenamid_2018_files/accessible-code-block-0.0.1/empty-anchor.js
deleted file mode 100644
index ca349fd6..00000000
--- a/docs/articles/web_only/dimethenamid_2018_files/accessible-code-block-0.0.1/empty-anchor.js
+++ /dev/null
@@ -1,15 +0,0 @@
-// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
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-
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-      if (linkList[j].innerHTML === "") {
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-    }
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@@ -93,12 +78,13 @@
 
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-      <img src="" class="logo" alt=""><h1>Short demo of the multistart method</h1>
+
+      <h1>Short demo of the multistart method</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change 20 April 2023
-(rebuilt 2023-11-16)</h4>
+(rebuilt 2025-02-13)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/multistart.rmd" class="external-link"><code>vignettes/web_only/multistart.rmd</code></a></small>
       <div class="d-none name"><code>multistart.rmd</code></div>
@@ -167,28 +153,26 @@ improvement in case of the full model, because it is less well-defined,
 which impedes convergence. For the reduced model, using multiple
 starting values only results in a small improvement of the model
 fit.</p>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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@@ -93,12 +78,13 @@
 
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   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="" class="logo" alt=""><h1>Benchmark timings for saem.mmkin</h1>
+
+      <h1>Benchmark timings for saem.mmkin</h1>
                         <h4 data-toc-skip class="author">Johannes
 Ranke</h4>
             
             <h4 data-toc-skip class="date">Last change 17 February 2023
-(rebuilt 2023-11-16)</h4>
+(rebuilt 2025-02-13)</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/web_only/saem_benchmarks.rmd" class="external-link"><code>vignettes/web_only/saem_benchmarks.rmd</code></a></small>
       <div class="d-none name"><code>saem_benchmarks.rmd</code></div>
@@ -153,7 +139,7 @@ explanation of the following preprocessing.</p>
 <div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/stats/anova.html" class="external-link">anova</a></span><span class="op">(</span></span>
 <span>  <span class="va">sfo_const</span>, <span class="va">dfop_const</span>, <span class="va">sforb_const</span>, <span class="va">hs_const</span>,</span>
-<span>  <span class="va">sfo_tc</span>, <span class="va">dfop_tc</span>, <span class="va">sforb_tc</span>, <span class="va">hs_tc</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu"><a href="https://rdrr.io/pkg/knitr/man/kable.html" class="external-link">kable</a></span><span class="op">(</span>, digits <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span></code></pre></div>
+<span>  <span class="va">sfo_tc</span>, <span class="va">dfop_tc</span>, <span class="va">sforb_tc</span>, <span class="va">hs_tc</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu">kable</span><span class="op">(</span>, digits <span class="op">=</span> <span class="fl">1</span><span class="op">)</span></span></code></pre></div>
 <table class="table">
 <thead><tr class="header">
 <th align="left"></th>
@@ -405,6 +391,16 @@ systems. All trademarks belong to their respective owners.</p>
 <td align="right">2.406</td>
 <td align="right">2.478</td>
 </tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.9</td>
+<td align="left">3.3</td>
+<td align="right">1.086</td>
+<td align="right">1.991</td>
+<td align="right">1.949</td>
+<td align="right">2.411</td>
+</tr>
 </tbody>
 </table>
 <p>Two-component error fits for SFO, DFOP, SFORB and HS.</p>
@@ -520,6 +516,16 @@ systems. All trademarks belong to their respective owners.</p>
 <td align="right">3.669</td>
 <td align="right">3.153</td>
 </tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.9</td>
+<td align="left">3.3</td>
+<td align="right">2.426</td>
+<td align="right">3.196</td>
+<td align="right">3.256</td>
+<td align="right">3.322</td>
+</tr>
 </tbody>
 </table>
 </div>
@@ -617,6 +623,14 @@ systems. All trademarks belong to their respective owners.</p>
 <td align="right">12.007</td>
 <td align="right">286.757</td>
 </tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.9</td>
+<td align="left">3.3</td>
+<td align="right">12.420</td>
+<td align="right">289.338</td>
+</tr>
 </tbody>
 </table>
 </div>
@@ -703,32 +717,37 @@ systems. All trademarks belong to their respective owners.</p>
 <td align="left">3.2</td>
 <td align="right">480.577</td>
 </tr>
+<tr class="even">
+<td align="left">Ryzen 9 7950X</td>
+<td align="left">Linux</td>
+<td align="left">1.2.9</td>
+<td align="left">3.3</td>
+<td align="right">485.836</td>
+</tr>
 </tbody>
 </table>
 </div>
 </div>
-  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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diff --git a/docs/articles/web_only/saem_benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js b/docs/articles/web_only/saem_benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
deleted file mode 100644
index ca349fd6..00000000
--- a/docs/articles/web_only/saem_benchmarks_files/accessible-code-block-0.0.1/empty-anchor.js
+++ /dev/null
@@ -1,15 +0,0 @@
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-// v0.0.1
-// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
-
-document.addEventListener('DOMContentLoaded', function() {
-  const codeList = document.getElementsByClassName("sourceCode");
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-      if (linkList[j].innerHTML === "") {
-        linkList[j].setAttribute('aria-hidden', 'true');
-      }
-    }
-  }
-});
-- 
cgit v1.2.1