From 282f88f9e28e683f524d5e05d65d8b18ab856a8d Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 26 Nov 2018 09:49:58 +0100 Subject: Further improvement of the logLik.mkinfit help Static documentation rebuilt by pkgdown --- docs/articles/FOCUS_L.html | 42 ++++++++++++++--------------- docs/articles/web_only/compiled_models.html | 12 ++++----- 2 files changed, 27 insertions(+), 27 deletions(-) (limited to 'docs/articles') diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html index 02b3f60e..4d337e72 100644 --- a/docs/articles/FOCUS_L.html +++ b/docs/articles/FOCUS_L.html @@ -110,15 +110,15 @@ summary(m.L1.SFO) 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Mon Nov 26 09:29:29 2018 
-## Date of summary: Mon Nov 26 09:29:29 2018 
+## Date of fit:     Mon Nov 26 09:47:23 2018 
+## Date of summary: Mon Nov 26 09:47:23 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.094 s
+## Fitted with method Port using 37 model solutions performed in 0.093 s
 ## 
 ## Weighting: none
 ## 
@@ -201,15 +201,15 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Mon Nov 26 09:29:30 2018 
-## Date of summary: Mon Nov 26 09:29:30 2018 
+## Date of fit:     Mon Nov 26 09:47:25 2018 
+## Date of summary: Mon Nov 26 09:47:25 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.467 s
+## Fitted with method Port using 611 model solutions performed in 1.475 s
 ## 
 ## Weighting: none
 ## 
@@ -296,15 +296,15 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Mon Nov 26 09:29:31 2018 
-## Date of summary: Mon Nov 26 09:29:31 2018 
+## Date of fit:     Mon Nov 26 09:47:26 2018 
+## Date of summary: Mon Nov 26 09:47:26 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.191 s
+## Fitted with method Port using 81 model solutions performed in 0.192 s
 ## 
 ## Weighting: none
 ## 
@@ -367,8 +367,8 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Mon Nov 26 09:29:32 2018 
-## Date of summary: Mon Nov 26 09:29:32 2018 
+## Date of fit:     Mon Nov 26 09:47:27 2018 
+## Date of summary: Mon Nov 26 09:47:27 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.828 s
+## Fitted with method Port using 336 model solutions performed in 0.831 s
 ## 
 ## Weighting: none
 ## 
@@ -459,8 +459,8 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Mon Nov 26 09:29:33 2018 
-## Date of summary: Mon Nov 26 09:29:33 2018 
+## Date of fit:     Mon Nov 26 09:47:28 2018 
+## Date of summary: Mon Nov 26 09:47:28 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -469,7 +469,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.334 s
+## Fitted with method Port using 137 model solutions performed in 0.336 s
 ## 
 ## Weighting: none
 ## 
@@ -560,15 +560,15 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Mon Nov 26 09:29:34 2018 
-## Date of summary: Mon Nov 26 09:29:34 2018 
+## Date of fit:     Mon Nov 26 09:47:28 2018 
+## Date of summary: Mon Nov 26 09:47:29 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.108 s
+## Fitted with method Port using 46 model solutions performed in 0.107 s
 ## 
 ## Weighting: none
 ## 
@@ -620,15 +620,15 @@
 
 
## mkin version used for fitting:    0.9.47.6 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Mon Nov 26 09:29:34 2018 
-## Date of summary: Mon Nov 26 09:29:34 2018 
+## Date of fit:     Mon Nov 26 09:47:28 2018 
+## Date of summary: Mon Nov 26 09:47:29 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.158 s
+## Fitted with method Port using 66 model solutions performed in 0.168 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index 93c800bf..083cdb79 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -125,9 +125,9 @@
 }

 
## Lade nötiges Paket: rbenchmark

 
##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.268    1.000     2.267        0
-## 1 deSolve, not compiled            3  18.698    8.244    18.690        0
-## 2      Eigenvalue based            3   2.812    1.240     2.811        0
+## 3     deSolve, compiled            3   2.264    1.000     2.263        0
+## 1 deSolve, not compiled            3  17.642    7.792    17.634        0
+## 2      Eigenvalue based            3   2.801    1.237     2.799        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -156,12 +156,12 @@
 }

 
## Successfully compiled differential equation model from auto-generated C code.

 
##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   4.032    1.000     4.028        0
-## 1 deSolve, not compiled            3  39.759    9.861    39.741        0
+## 2     deSolve, compiled            3   4.012    1.000     4.010        0
+## 1 deSolve, not compiled            3  37.606    9.373    37.589        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0

-
Here we get a performance benefit of a factor of 10 using the version of the differential equation model compiled from C code!

+
Here we get a performance benefit of a factor of 9 using the version of the differential equation model compiled from C code!

 
This vignette was built with mkin 0.9.47.6 on

 
## R version 3.5.1 (2018-07-02)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
-- 
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