From 3eefecf0adfbb30b8fb895c244dea6903bcb3e9c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 31 Jan 2019 16:55:20 +0100 Subject: Restore NAMESPACE which was accidentally overwritten by pkgdown -> roxygen --- docs/articles/FOCUS_D.html | 14 +++++----- docs/articles/FOCUS_L.html | 40 ++++++++++++++--------------- docs/articles/web_only/compiled_models.html | 10 ++++---- 3 files changed, 32 insertions(+), 32 deletions(-) (limited to 'docs/articles') diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index deab980c..9acab53a 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -94,8 +94,8 @@ -

This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using mkin. After loading the library we look a the data. We have observed concentrations in the column named value at the times specified in column time for the two observed variables named parent and m1.

-
library("mkin", quietly = TRUE)
+
This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using mkin. After loading the library we look at the data. We have observed concentrations in the column named value at the times specified in column time for the two observed variables named parent and m1.

+
library(mkin, quietly = TRUE)
 print(FOCUS_2006_D)

 
##      name time  value
 ## 1  parent    0  99.46
@@ -161,10 +161,10 @@
 

 
A comprehensive report of the results is obtained using the summary method for mkinfit objects.

 
summary(fit)

-
## mkin version used for fitting:    0.9.47.6 
-## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Nov 23 19:58:46 2018 
-## Date of summary: Fri Nov 23 19:58:47 2018 
+
## mkin version used for fitting:    0.9.47.5 
+## R version used for fitting:       3.5.2 
+## Date of fit:     Thu Jan 31 16:52:37 2019 
+## Date of summary: Thu Jan 31 16:52:38 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -172,7 +172,7 @@
 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method Port using 153 model solutions performed in 0.736 s
+## Fitted with method Port using 153 model solutions performed in 0.695 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index b53ab0d0..e3ca9aff 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -111,8 +111,8 @@
 summary(m.L1.SFO)
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:40 2019 
-## Date of summary: Thu Jan 31 15:43:40 2019 
+## Date of fit:     Thu Jan 31 16:52:39 2019 
+## Date of summary: Thu Jan 31 16:52:39 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
@@ -202,15 +202,15 @@
 
summary(m.L1.FOMC, data = FALSE)

 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:42 2019 
-## Date of summary: Thu Jan 31 15:43:42 2019 
+## Date of fit:     Thu Jan 31 16:52:41 2019 
+## Date of summary: Thu Jan 31 16:52:41 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.502 s
+## Fitted with method Port using 611 model solutions performed in 1.49 s
 ## 
 ## Weighting: none
 ## 
@@ -297,15 +297,15 @@
 
summary(m.L2.FOMC, data = FALSE)

 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:42 2019 
-## Date of summary: Thu Jan 31 15:43:42 2019 
+## Date of fit:     Thu Jan 31 16:52:42 2019 
+## Date of summary: Thu Jan 31 16:52:42 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.195 s
+## Fitted with method Port using 81 model solutions performed in 0.198 s
 ## 
 ## Weighting: none
 ## 
@@ -368,8 +368,8 @@
 
summary(m.L2.DFOP, data = FALSE)

 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:43 2019 
-## Date of summary: Thu Jan 31 15:43:43 2019 
+## Date of fit:     Thu Jan 31 16:52:43 2019 
+## Date of summary: Thu Jan 31 16:52:43 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -378,7 +378,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.836 s
+## Fitted with method Port using 336 model solutions performed in 0.839 s
 ## 
 ## Weighting: none
 ## 
@@ -460,8 +460,8 @@
 
summary(mm.L3[["DFOP", 1]])

 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:44 2019 
-## Date of summary: Thu Jan 31 15:43:45 2019 
+## Date of fit:     Thu Jan 31 16:52:44 2019 
+## Date of summary: Thu Jan 31 16:52:44 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -470,7 +470,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.34 s
+## Fitted with method Port using 137 model solutions performed in 0.341 s
 ## 
 ## Weighting: none
 ## 
@@ -561,15 +561,15 @@
 
summary(mm.L4[["SFO", 1]], data = FALSE)

 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:45 2019 
-## Date of summary: Thu Jan 31 15:43:45 2019 
+## Date of fit:     Thu Jan 31 16:52:44 2019 
+## Date of summary: Thu Jan 31 16:52:45 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.109 s
+## Fitted with method Port using 46 model solutions performed in 0.11 s
 ## 
 ## Weighting: none
 ## 
@@ -621,15 +621,15 @@
 
summary(mm.L4[["FOMC", 1]], data = FALSE)

 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.2 
-## Date of fit:     Thu Jan 31 15:43:45 2019 
-## Date of summary: Thu Jan 31 15:43:45 2019 
+## Date of fit:     Thu Jan 31 16:52:45 2019 
+## Date of summary: Thu Jan 31 16:52:45 2019 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.163 s
+## Fitted with method Port using 66 model solutions performed in 0.162 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index d7d76b49..08bb9b44 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -126,9 +126,9 @@
 }

 
## Lade nötiges Paket: rbenchmark

 
##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.331    1.000     2.330        0
-## 1 deSolve, not compiled            3  17.369    7.451    17.360        0
-## 2      Eigenvalue based            3   2.878    1.235     2.876        0
+## 3     deSolve, compiled            3   2.353    1.000     2.352        0
+## 1 deSolve, not compiled            3  17.619    7.488    17.609        0
+## 2      Eigenvalue based            3   2.899    1.232     2.898        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -157,8 +157,8 @@
 }

 
## Successfully compiled differential equation model from auto-generated C code.

 
##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   4.120    1.000     4.116        0
-## 1 deSolve, not compiled            3  37.011    8.983    36.993        0
+## 2     deSolve, compiled            3   4.180    1.000     4.177        0
+## 1 deSolve, not compiled            3  37.331    8.931    37.312        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0

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