From b2cbfc35e4c2b3f8dbb2e9d83ab1f4b358427896 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 14 Sep 2018 17:20:20 +0200 Subject: Update NEWS Static documentation rebuilt by pkgdown --- docs/articles/FOCUS_D.html | 6 ++--- docs/articles/FOCUS_L.html | 38 ++++++++++++++--------------- docs/articles/web_only/compiled_models.html | 12 ++++----- 3 files changed, 28 insertions(+), 28 deletions(-) (limited to 'docs/articles') diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html index 6dde02d4..a90cb7fb 100644 --- a/docs/articles/FOCUS_D.html +++ b/docs/articles/FOCUS_D.html @@ -162,8 +162,8 @@ 
summary(fit)
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:50:31 2018 
-## Date of summary: Fri Sep 14 16:50:31 2018 
+## Date of fit:     Fri Sep 14 17:17:43 2018 
+## Date of summary: Fri Sep 14 17:17:44 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -171,7 +171,7 @@
 ## 
 ## Model predictions using solution type deSolve 
 ## 
-## Fitted with method Port using 153 model solutions performed in 0.728 s
+## Fitted with method Port using 153 model solutions performed in 0.645 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index 1087c0ed..8b06f072 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -110,15 +110,15 @@
 summary(m.L1.SFO)
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:54:49 2018 
-## Date of summary: Fri Sep 14 16:54:49 2018 
+## Date of fit:     Fri Sep 14 17:43:07 2018 
+## Date of summary: Fri Sep 14 17:43:07 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.088 s
+## Fitted with method Port using 37 model solutions performed in 0.091 s
 ## 
 ## Weighting: none
 ## 
@@ -201,15 +201,15 @@
 
 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:54:51 2018 
-## Date of summary: Fri Sep 14 16:54:51 2018 
+## Date of fit:     Fri Sep 14 17:43:09 2018 
+## Date of summary: Fri Sep 14 17:43:09 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.349 s
+## Fitted with method Port using 611 model solutions performed in 1.398 s
 ## 
 ## Weighting: none
 ## 
@@ -296,8 +296,8 @@
 
 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:54:51 2018 
-## Date of summary: Fri Sep 14 16:54:51 2018 
+## Date of fit:     Fri Sep 14 17:43:10 2018 
+## Date of summary: Fri Sep 14 17:43:10 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
@@ -367,8 +367,8 @@
 
 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:54:52 2018 
-## Date of summary: Fri Sep 14 16:54:52 2018 
+## Date of fit:     Fri Sep 14 17:43:11 2018 
+## Date of summary: Fri Sep 14 17:43:11 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -377,7 +377,7 @@
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.754 s
+## Fitted with method Port using 336 model solutions performed in 0.782 s
 ## 
 ## Weighting: none
 ## 
@@ -459,8 +459,8 @@
 
 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:54:53 2018 
-## Date of summary: Fri Sep 14 16:54:53 2018 
+## Date of fit:     Fri Sep 14 17:43:12 2018 
+## Date of summary: Fri Sep 14 17:43:12 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -560,15 +560,15 @@
 
 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:54:54 2018 
-## Date of summary: Fri Sep 14 16:54:54 2018 
+## Date of fit:     Fri Sep 14 17:43:12 2018 
+## Date of summary: Fri Sep 14 17:43:12 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 46 model solutions performed in 0.098 s
+## Fitted with method Port using 46 model solutions performed in 0.106 s
 ## 
 ## Weighting: none
 ## 
@@ -620,15 +620,15 @@
 
 
## mkin version used for fitting:    0.9.47.5 
 ## R version used for fitting:       3.5.1 
-## Date of fit:     Fri Sep 14 16:54:54 2018 
-## Date of summary: Fri Sep 14 16:54:54 2018 
+## Date of fit:     Fri Sep 14 17:43:12 2018 
+## Date of summary: Fri Sep 14 17:43:12 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.153 s
+## Fitted with method Port using 66 model solutions performed in 0.15 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index e941bea3..0d91a50c 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -125,9 +125,9 @@
 }

 
## Lade nötiges Paket: rbenchmark

 
##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   2.120    1.000     2.118    0.000
-## 1 deSolve, not compiled            3  17.195    8.111    17.187    0.000
-## 2      Eigenvalue based            3   2.589    1.221     2.582    0.004
+## 3     deSolve, compiled            3   2.174    1.000     2.172        0
+## 1 deSolve, not compiled            3  16.745    7.702    16.737        0
+## 2      Eigenvalue based            3   2.652    1.220     2.650        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -156,12 +156,12 @@
 }

 
## Successfully compiled differential equation model from auto-generated C code.

 
##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   3.761    1.000     3.758    0.000
-## 1 deSolve, not compiled            3  36.462    9.695    36.441    0.004
+## 2     deSolve, compiled            3   4.012    1.000     4.010        0
+## 1 deSolve, not compiled            3  35.620    8.878    35.604        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0

-
Here we get a performance benefit of a factor of 10 using the version of the differential equation model compiled from C code!

+
Here we get a performance benefit of a factor of 9 using the version of the differential equation model compiled from C code!

 
This vignette was built with mkin 0.9.47.5 on

 
## R version 3.5.1 (2018-07-02)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
-- 
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