From bcd98a1fa3cd2fb4b7105b7ec6c129ca18f872e8 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Fri, 17 Feb 2023 22:48:18 +0100
Subject: Update online docs, fix bug that surfaced
---
docs/dev/articles/prebuilt/2022_dmta_parent.html | 41 ++++++++++++++++++------
1 file changed, 31 insertions(+), 10 deletions(-)
(limited to 'docs/dev/articles/prebuilt/2022_dmta_parent.html')
diff --git a/docs/dev/articles/prebuilt/2022_dmta_parent.html b/docs/dev/articles/prebuilt/2022_dmta_parent.html
index 89c9bfd8..2ff966b4 100644
--- a/docs/dev/articles/prebuilt/2022_dmta_parent.html
+++ b/docs/dev/articles/prebuilt/2022_dmta_parent.html
@@ -34,14 +34,14 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.3</span>
</span>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
- <a href="../../reference/index.html">Functions and data</a>
+ <a href="../../reference/index.html">Reference</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
@@ -53,6 +53,9 @@
<li>
<a href="../../articles/mkin.html">Introduction to mkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Example evaluations with (generalised) nonlinear least squares</li>
<li>
<a href="../../articles/FOCUS_D.html">Example evaluation of FOCUS Example Dataset D</a>
</li>
@@ -60,22 +63,31 @@
<a href="../../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
</li>
<li>
- <a href="../../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ </li>
+ <li class="divider">
</li>
+<li class="dropdown-header">Example evaluations with hierarchical models (nonlinear mixed-effects models)</li>
<li>
- <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ <a href="../../articles/prebuilt/2022_dmta_parent.html">Testing hierarchical parent degradation kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
+ <a href="../../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
- <a href="../../articles/web_only/FOCUS_Z.html">Example evaluation of FOCUS Example Dataset Z</a>
+ <a href="../../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
- <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ <a href="../../articles/web_only/dimethenamid_2018.html">Comparison of saemix and nlme evaluations of dimethenamid data from 2018</a>
</li>
<li>
- <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ <a href="../../articles/web_only/multistart.html">Short demo of the multistart method</a>
+ </li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Performance</li>
+ <li>
+ <a href="../../articles/web_only/compiled_models.html">Performance benefit by using compiled model definitions in mkin</a>
</li>
<li>
<a href="../../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
@@ -83,6 +95,15 @@
<li>
<a href="../../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
</li>
+ <li class="divider">
+ </li>
+<li class="dropdown-header">Miscellaneous</li>
+ <li>
+ <a href="../../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
+ </li>
+ <li>
+ <a href="../../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
+ </li>
</ul>
</li>
<li>
@@ -115,7 +136,7 @@ with residue data on dimethenamid and dimethenamid-P</h1>
Ranke</h4>
<h4 data-toc-skip class="date">Last change on 5 January
-2023, last compiled on 28 Januar 2023</h4>
+2023, last compiled on 17 Februar 2023</h4>
<small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/vignettes/prebuilt/2022_dmta_parent.rmd" class="external-link"><code>vignettes/prebuilt/2022_dmta_parent.rmd</code></a></small>
<div class="hidden name"><code>2022_dmta_parent.rmd</code></div>
@@ -134,7 +155,7 @@ FOMC, DFOP and HS can be fitted with the mkin package.</p>
173340 (Application of nonlinear hierarchical models to the kinetic
evaluation of chemical degradation data) of the German Environment
Agency carried out in 2022 and 2023.</p>
-<p>The mkin package is used in version 1.2.2. It contains the test data
+<p>The mkin package is used in version 1.2.3. It contains the test data
and the functions used in the evaluations. The <code>saemix</code>
package is used as a backend for fitting the NLHM, but is also loaded to
make the convergence plot function available.</p>
--
cgit v1.2.1