From 524a8bba89b95840b4e9215c403947a8bb76d7b2 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 30 Nov 2020 16:05:10 +0100 Subject: Complete rebuild of static docs of dev version --- docs/dev/articles/web_only/benchmarks.html | 48 +++++++++++++++--------------- 1 file changed, 24 insertions(+), 24 deletions(-) (limited to 'docs/dev/articles/web_only/benchmarks.html') diff --git a/docs/dev/articles/web_only/benchmarks.html b/docs/dev/articles/web_only/benchmarks.html index ff70847e..8e157c0f 100644 --- a/docs/dev/articles/web_only/benchmarks.html +++ b/docs/dev/articles/web_only/benchmarks.html @@ -102,7 +102,7 @@

Benchmark timings for mkin

Johannes Ranke

-

2020-11-19

+

2020-11-30

Source: vignettes/web_only/benchmarks.rmd @@ -127,14 +127,14 @@

One metabolite:

 SFO_SFO <- mkinmod(
-  parent = mkinsub("SFO", "m1"),
-  m1 = mkinsub("SFO"))
+  parent = mkinsub("SFO", "m1"),
+  m1 = mkinsub("SFO"))
 FOMC_SFO <- mkinmod(
-  parent = mkinsub("FOMC", "m1"),
-  m1 = mkinsub("SFO"))
+  parent = mkinsub("FOMC", "m1"),
+  m1 = mkinsub("SFO"))
 DFOP_SFO <- mkinmod(
-  parent = mkinsub("FOMC", "m1"),
-  m1 = mkinsub("SFO"))
+  parent = mkinsub("FOMC", "m1"),
+  m1 = mkinsub("SFO"))
 t3 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D)))[["elapsed"]]
 t4 <- system.time(mmkin_bench(list(SFO_SFO, FOMC_SFO, DFOP_SFO), list(FOCUS_D),
     error_model = "tc"))[["elapsed"]]
@@ -148,14 +148,14 @@ error_model = "obs"))[["elapsed"]]

Two metabolites, synthetic data:

-m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
-                           M1 = mkinsub("SFO", "M2"),
-                           M2 = mkinsub("SFO"),
+m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
+                           M1 = mkinsub("SFO", "M2"),
+                           M2 = mkinsub("SFO"),
                            use_of_ff = "max", quiet = TRUE)
 
-m_synth_DFOP_par <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")),
-                           M1 = mkinsub("SFO"),
-                           M2 = mkinsub("SFO"),
+m_synth_DFOP_par <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")),
+                           M1 = mkinsub("SFO"),
+                           M2 = mkinsub("SFO"),
                            use_of_ff = "max", quiet = TRUE)
 
 SFO_lin_a <- synthetic_data_for_UBA_2014[[1]]$data
@@ -232,8 +232,8 @@
 
 
 0.9.50.4
-1.702
-3.717
+1.786
+3.729
 
 
 
@@ -294,9 +294,9 @@
 
 
 0.9.50.4
-1.355
-7.015
-2.729
+1.397
+7.251
+2.810
 
 
 
@@ -381,12 +381,12 @@
 
 
 0.9.50.4
-0.759
-1.245
-1.436
-3.687
-1.886
-3.028
+0.783
+1.282
+1.486
+3.815
+1.958
+3.105
 
 
 
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