Export a list of datasets format to a CAKE study file

+ + +

In addition to the datasets, the pathways in the degradation model can be +specified as well.

+ +

CAKE_export(
+  ds,
+  map = c(parent = "Parent"),
+  links = NA,
+  filename = "CAKE_export.csf",
+  path = ".",
+  overwrite = FALSE,
+  study = "Codlemone aerobic soil degradation",
+  description = "",
+  time_unit = "days",
+  res_unit = "% AR",
+  comment = "Created using mkin::CAKE_export",
+  date = Sys.Date(),
+  optimiser = "IRLS"
+)

+ +

Arguments

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

ds	A named list of datasets in long format as compatible with +`mkinfit`.
map	A character vector with CAKE compartment names (Parent, A1, ...), +named with the names used in the list of datasets.
links	An optional character vector of target compartments, named with +the names of the source compartments. In order to make this easier, the +names are used as in the datasets supplied.
filename	Where to write the result. Should end in .csf in order to be +compatible with CAKE.
path	An optional path to the output file.
overwrite	If TRUE, existing files are overwritten.
study	The name of the study.
description	An optional description.
time_unit	The time unit for the residue data.
res_unit	The unit used for the residues.
comment	An optional comment.
date	The date of file creation.
optimiser	Can be OLS or IRLS.

+ +

Value

+ +

The function is called for its side effect.

+ +