Export a list of datasets format to a CAKE study file

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In addition to the datasets, the pathways in the degradation model can be -specified as well.

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CAKE_export(
-  ds,
-  map = c(parent = "Parent"),
-  links = NA,
-  filename = "CAKE_export.csf",
-  path = ".",
-  overwrite = FALSE,
-  study = "Degradinol aerobic soil degradation",
-  description = "",
-  time_unit = "days",
-  res_unit = "% AR",
-  comment = "",
-  date = Sys.Date(),
-  optimiser = "IRLS"
-)

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Arguments

ds: A named list of datasets in long format as compatible with -mkinfit.
map: A character vector with CAKE compartment names (Parent, A1, ...), -named with the names used in the list of datasets.
links: An optional character vector of target compartments, named with -the names of the source compartments. In order to make this easier, the -names are used as in the datasets supplied.
filename: Where to write the result. Should end in .csf in order to be -compatible with CAKE.
path: An optional path to the output file.
overwrite: If TRUE, existing files are overwritten.
study: The name of the study.
description: An optional description.
time_unit: The time unit for the residue data.
res_unit: The unit used for the residues.
comment: An optional comment.
date: The date of file creation.
optimiser: Can be OLS or IRLS.

Value

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The function is called for its side effect.

Author

Johannes Ranke

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