From bc3825ae2d12c18ea3d3caf17eb23c93fef180b8 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 8 Oct 2020 09:31:35 +0200 Subject: Fix issues for release --- docs/dev/reference/create_deg_func.html | 16 +++++++--------- 1 file changed, 7 insertions(+), 9 deletions(-) (limited to 'docs/dev/reference/create_deg_func.html') diff --git a/docs/dev/reference/create_deg_func.html b/docs/dev/reference/create_deg_func.html index 59984b8c..a25fa165 100644 --- a/docs/dev/reference/create_deg_func.html +++ b/docs/dev/reference/create_deg_func.html @@ -72,7 +72,7 @@ mkin - 0.9.50.3 + 0.9.50.3 @@ -171,16 +171,14 @@ SFO_SFO <- mkinmod( parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
FOCUS_D <- subset(FOCUS_2006_D, value != 0) # to avoid warnings -fit_1 <- mkinfit(SFO_SFO, FOCUS_D, solution_type = "analytical", quiet = TRUE) -fit_2 <- mkinfit(SFO_SFO, FOCUS_D, solution_type = "deSolve", quiet = TRUE) -# \dontrun{ +fit_1 <- mkinfit(SFO_SFO, FOCUS_D, solution_type = "analytical", quiet = TRUE)
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
fit_2 <- mkinfit(SFO_SFO, FOCUS_D, solution_type = "deSolve", quiet = TRUE)
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
# \dontrun{ if (require(rbenchmark)) benchmark( analytical = mkinfit(SFO_SFO, FOCUS_D, solution_type = "analytical", quiet = TRUE), deSolve = mkinfit(SFO_SFO, FOCUS_D, solution_type = "deSolve", quiet = TRUE), - replications = 2)
#> Loading required package: rbenchmark
#> test replications elapsed relative user.self sys.self user.child -#> 1 analytical 2 0.422 1.000 0.421 0 0 -#> 2 deSolve 2 0.722 1.711 0.721 0 0 + replications = 2)
#> Loading required package: rbenchmark
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
#> Warning: Shapiro-Wilk test for standardized residuals: p = 0.0165
#> test replications elapsed relative user.self sys.self user.child +#> 1 analytical 2 0.423 1.000 0.423 0 0 +#> 2 deSolve 2 0.716 1.693 0.715 0 0 #> sys.child #> 1 0 #> 2 0
DFOP_SFO <- mkinmod( @@ -189,8 +187,8 @@ analytical = mkinfit(DFOP_SFO, FOCUS_D, solution_type = "analytical", quiet = TRUE), deSolve = mkinfit(DFOP_SFO, FOCUS_D, solution_type = "deSolve", quiet = TRUE), replications = 2)
#> test replications elapsed relative user.self sys.self user.child -#> 1 analytical 2 0.907 1.000 0.906 0 0 -#> 2 deSolve 2 1.659 1.829 1.658 0 0 +#> 1 analytical 2 0.910 1.000 0.909 0 0 +#> 2 deSolve 2 1.734 1.905 1.733 0 0 #> sys.child #> 1 0 #> 2 0
# } -- cgit v1.2.1