From 48c463680b51fa767b4cd7bd62865f192d0354ac Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sat, 6 Feb 2021 18:30:32 +0100
Subject: Reintroduce interface to saemix

Also after the upgrade from buster to bullseye of my local system, some
test results for saemix have changed.
---
 docs/dev/reference/endpoints.html | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index db702c2e..a13e11a7 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.4</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.1.9000</span>
       </span>
     </div>
 
@@ -127,7 +127,7 @@ advantage that the SFORB model can also be used for metabolites." />
       <ul class="nav navbar-nav navbar-right">
         <li>
   <a href="https://github.com/jranke/mkin/">
-    <span class="fab fa fab fa-github fa-lg"></span>
+    <span class="fab fa-github fa-lg"></span>
      
   </a>
 </li>
-- 
cgit v1.2.1


From 3dde3b95f1db925c89cd04d19f95c6fc9f68f473 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sat, 13 Feb 2021 12:40:44 +0100
Subject: Update docs

---
 docs/dev/reference/endpoints.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index a13e11a7..301b454f 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.1.9000</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.2.9000</span>
       </span>
     </div>
 
-- 
cgit v1.2.1


From b9be19af5e3085216d0cd5af439332f631fa8b92 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Mon, 15 Feb 2021 17:36:12 +0100
Subject: Fully rebuild docs, rerun tests and check

---
 docs/dev/reference/endpoints.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index 301b454f..c9912f9c 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.2.9000</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span>
       </span>
     </div>
 
-- 
cgit v1.2.1


From c73b2f30ec836c949885784ab576e814eb8070a9 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 9 Mar 2021 17:35:47 +0100
Subject: Some improvements for borderline cases

- fit_with_errors for saem()
- test_log_parms for mean_degparms() and saem()
---
 docs/dev/reference/endpoints.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index c9912f9c..63bec6a8 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.4.9000</span>
       </span>
     </div>
 
-- 
cgit v1.2.1


From 0c9b2f0e3c8ce65cb790c9e048476784cbbea070 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Fri, 11 Jun 2021 11:14:45 +0200
Subject: Finished 'summary.nlmixr.mmkin', checks, docs

---
 docs/dev/reference/endpoints.html | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index 63bec6a8..dc1d1f17 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.4.9000</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.5</span>
       </span>
     </div>
 
@@ -165,8 +165,8 @@ advantage that the SFORB model can also be used for metabolites.</p>
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
       <th>fit</th>
-      <td><p>An object of class <a href='mkinfit.html'>mkinfit</a>, <a href='nlme.mmkin.html'>nlme.mmkin</a> or
-<a href='saem.html'>saem.mmkin</a>. Or another object that has list components
+      <td><p>An object of class <a href='mkinfit.html'>mkinfit</a>, <a href='nlme.mmkin.html'>nlme.mmkin</a>, <a href='saem.html'>saem.mmkin</a> or
+<a href='nlmixr.mmkin.html'>nlmixr.mmkin</a>. Or another object that has list components
 mkinmod containing an <a href='mkinmod.html'>mkinmod</a> degradation model, and two numeric vectors,
 bparms.optim and bparms.fixed, that contain parameter values
 for that model.</p></td>
-- 
cgit v1.2.1


From 0b754ffa91b9496bdd2f892cf3ca2bd887028dea Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 27 Jul 2021 18:22:01 +0200
Subject: Fix dimethenamid vignette problems and update docs

---
 docs/dev/reference/endpoints.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index dc1d1f17..aa5bd773 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.5</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.0</span>
       </span>
     </div>
 
-- 
cgit v1.2.1


From 137612045c23198f10d6e8612c32e266c2a6c00e Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Thu, 29 Jul 2021 12:17:56 +0200
Subject: Go back to 1.0.x version, update docs

---
 docs/dev/reference/endpoints.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index aa5bd773..dc1d1f17 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.0</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.5</span>
       </span>
     </div>
 
-- 
cgit v1.2.1


From c41381a961263c28d60976e68923157916c78b15 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Thu, 16 Sep 2021 15:31:13 +0200
Subject: Adapt and improve the dimethenamid vignette

Adapt to the corrected data and unify control parameters for saemix and
nlmixr with saem. Update docs
---
 docs/dev/reference/endpoints.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'docs/dev/reference/endpoints.html')

diff --git a/docs/dev/reference/endpoints.html b/docs/dev/reference/endpoints.html
index dc1d1f17..aa5bd773 100644
--- a/docs/dev/reference/endpoints.html
+++ b/docs/dev/reference/endpoints.html
@@ -78,7 +78,7 @@ advantage that the SFORB model can also be used for metabolites." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.5</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.0</span>
       </span>
     </div>
 
-- 
cgit v1.2.1