From 48c463680b51fa767b4cd7bd62865f192d0354ac Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sat, 6 Feb 2021 18:30:32 +0100 Subject: Reintroduce interface to saemix Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed. --- docs/dev/reference/index.html | 10 ++-------- 1 file changed, 2 insertions(+), 8 deletions(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index e038ef5c..7e98aa50 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 0.9.50.4 + 1.0.1.9000 @@ -175,7 +175,7 @@ -

mmkin()

+

mmkin() print(<mmkin>)

Fit one or more kinetic models with one or more state variables to one or more datasets

@@ -297,12 +297,6 @@ of an mmkin object

AIC(<mmkin>) BIC(<mmkin>)

Calculate the AIC for a column of an mmkin object

- - - -

print(<mmkin>)

- -

Print method for mmkin objects

-- cgit v1.2.1 From 3dde3b95f1db925c89cd04d19f95c6fc9f68f473 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sat, 13 Feb 2021 12:40:44 +0100 Subject: Update docs --- docs/dev/reference/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index 7e98aa50..b52ecb22 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.0.1.9000 + 1.0.2.9000 -- cgit v1.2.1 From b9be19af5e3085216d0cd5af439332f631fa8b92 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 15 Feb 2021 17:36:12 +0100 Subject: Fully rebuild docs, rerun tests and check --- docs/dev/reference/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index b52ecb22..03a21517 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.0.2.9000 + 1.0.3.9000 -- cgit v1.2.1 From c73b2f30ec836c949885784ab576e814eb8070a9 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 9 Mar 2021 17:35:47 +0100 Subject: Some improvements for borderline cases - fit_with_errors for saem() - test_log_parms for mean_degparms() and saem() --- docs/dev/reference/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index 03a21517..5533a01f 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.0.3.9000 + 1.0.4.9000 -- cgit v1.2.1 From 0c9b2f0e3c8ce65cb790c9e048476784cbbea070 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 11 Jun 2021 11:14:45 +0200 Subject: Finished 'summary.nlmixr.mmkin', checks, docs --- docs/dev/reference/index.html | 22 ++++++++++++++++++++-- 1 file changed, 20 insertions(+), 2 deletions(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index 5533a01f..f5825742 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.0.4.9000 + 1.0.5 @@ -324,6 +324,12 @@ of an mmkin object

Fit nonlinear mixed models with SAEM

+ +

nlmixr(<mmkin>) print(<nlmixr.mmkin>) nlmixr_model() nlmixr_data()

+ +

Fit nonlinear mixed models using nlmixr

+ +

plot(<mixed.mmkin>)

@@ -336,6 +342,12 @@ of an mmkin object

Summary method for class "nlme.mmkin"

+ +

summary(<nlmixr.mmkin>) print(<summary.nlmixr.mmkin>)

+ +

Summary method for class "nlmixr.mmkin"

+ +

summary(<saem.mmkin>) print(<summary.saem.mmkin>)

@@ -343,7 +355,7 @@ of an mmkin object

-

nlme_function() mean_degparms() nlme_data()

+

nlme_function() nlme_data()

Helper functions to create nlme models from mmkin row objects

@@ -605,6 +617,12 @@ kinetic models fitted with mkinfit

Function to plot squared residuals and the error model for an mkin object

+ +

mean_degparms()

+ +

Calculate mean degradation parameters for an mmkin row object

+ +

create_deg_func()

-- cgit v1.2.1 From 255430279d65bfe92093d48c9a586b062a38303d Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 22 Jun 2021 15:15:02 +0200 Subject: Update development version of online docs --- docs/dev/reference/index.html | 6 ++++++ 1 file changed, 6 insertions(+) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index f5825742..bb030605 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -581,6 +581,12 @@ kinetic models fitted with mkinfit

Function to perform isometric log-ratio transformation

+ +

tffm0() invtffm0()

+ +

Transform formation fractions as in the first published mkin version

+ +

logLik(<mkinfit>)

-- cgit v1.2.1 From 0b754ffa91b9496bdd2f892cf3ca2bd887028dea Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 27 Jul 2021 18:22:01 +0200 Subject: Fix dimethenamid vignette problems and update docs --- docs/dev/reference/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index bb030605..d5ec387a 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.0.5 + 1.1.0 -- cgit v1.2.1 From 137612045c23198f10d6e8612c32e266c2a6c00e Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 29 Jul 2021 12:17:56 +0200 Subject: Go back to 1.0.x version, update docs --- docs/dev/reference/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index d5ec387a..bb030605 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.1.0 + 1.0.5 -- cgit v1.2.1 From c41381a961263c28d60976e68923157916c78b15 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 16 Sep 2021 15:31:13 +0200 Subject: Adapt and improve the dimethenamid vignette Adapt to the corrected data and unify control parameters for saemix and nlmixr with saem. Update docs --- docs/dev/reference/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index bb030605..d5ec387a 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -71,7 +71,7 @@ mkin - 1.0.5 + 1.1.0 -- cgit v1.2.1 From 5c15ef747568b3a9a9c094b6aa546dc80e3aa87a Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 27 Sep 2021 20:10:01 +0200 Subject: intervals() methods, more DFOP/tc variants --- docs/dev/reference/index.html | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index d5ec387a..092e35c8 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -370,6 +370,24 @@ of an mmkin object

mixed() print(<mixed.mmkin>)

Create a mixed effects model from an mmkin row object

+ + + +

reexports

+ +

Objects exported from other packages

+ + + +

intervals(<saem.mmkin>)

+ +

Confidence intervals for parameters in saem.mmkin objects

+ + + +

intervals(<nlmixr.mmkin>)

+ +

Confidence intervals for parameters in nlmixr.mmkin objects

-- cgit v1.2.1