From 6178249bbb5e9de7cb7f34287ee7de28a68fed6c Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 10 Aug 2022 15:38:17 +0200 Subject: Change dev branch used for docs, update static docs --- docs/dev/reference/index.html | 61 +++++++++++++++++++++++++------------------ 1 file changed, 35 insertions(+), 26 deletions(-) (limited to 'docs/dev/reference/index.html') diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index afd3692d..98f170b6 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -17,7 +17,7 @@ mkin - 1.1.0 + 1.1.2 @@ -26,7 +26,7 @@ Functions and data
  • -
  • Example evaluation of FOCUS Laboratory Data L1 to L3
    • +
  • + Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models +
  • Example evaluation of FOCUS Example Dataset Z
    • @@ -95,9 +98,27 @@

    Fit one or more kinetic models with one or more state variables to one or more datasets

    -

    nafta() print(<nafta>)

    +

    mhmkin() `[`(<mhmkin>) print(<mhmkin>)

    -

    Evaluate parent kinetics using the NAFTA guidance

    +

    Fit nonlinear mixed-effects models built from one or more kinetic +degradation models and one or more error models

    + +

    Generics

    +

    Generic functions introduced by the package

    + + +

    convergence() print(<convergence.mmkin>)

    + +

    Method to get convergence information

    + +

    illparms() print(<illparms.mmkin>) print(<illparms.mhmkin>)

    + +

    Method to get the names of ill-defined parameters

    + +

    endpoints()

    + +

    Function to calculate endpoints for further use from kinetic models fitted +with mkinfit

    Show results

    Functions working with mkinfit objects

    @@ -134,11 +155,6 @@ more datasets

    mkinerrmin()

    Calculate the minimum error to assume in order to pass the variance test

    - -

    endpoints()

    - -

    Function to calculate endpoints for further use from kinetic models fitted -with mkinfit

    aw()

    @@ -164,9 +180,13 @@ of an mmkin object

    AIC(<mmkin>) BIC(<mmkin>)

    Calculate the AIC for a column of an mmkin object

    + +

    summary(<mmkin>) print(<summary.mmkin>)

    + +

    Summary method for class "mmkin"

    Mixed models

    -

    Create and work with nonlinear mixed effects models

    +

    Create and work with nonlinear hierarchical models

    nlme(<mmkin>) print(<nlme.mmkin>) update(<nlme.mmkin>)

    @@ -177,9 +197,10 @@ of an mmkin object

    Fit nonlinear mixed models with SAEM

    -

    nlmixr(<mmkin>) print(<nlmixr.mmkin>) nlmixr_model() nlmixr_data()

    +

    mhmkin() `[`(<mhmkin>) print(<mhmkin>)

    -

    Fit nonlinear mixed models using nlmixr

    +

    Fit nonlinear mixed-effects models built from one or more kinetic +degradation models and one or more error models

    plot(<mixed.mmkin>)

    @@ -188,10 +209,6 @@ of an mmkin object

    summary(<nlme.mmkin>) print(<summary.nlme.mmkin>)

    Summary method for class "nlme.mmkin"

    - -

    summary(<nlmixr.mmkin>) print(<summary.nlmixr.mmkin>)

    - -

    Summary method for class "nlmixr.mmkin"

    summary(<saem.mmkin>) print(<summary.saem.mmkin>)

    @@ -209,17 +226,13 @@ of an mmkin object

    Create a mixed effects model from an mmkin row object

    -

    reexports

    +

    reexports intervals lrtest nlme

    Objects exported from other packages

    intervals(<saem.mmkin>)

    Confidence intervals for parameters in saem.mmkin objects

    - -

    intervals(<nlmixr.mmkin>)

    - -

    Confidence intervals for parameters in nlmixr.mmkin objects

    Datasets and known results

    @@ -341,10 +354,6 @@ kinetic models fitted with mkinfit

    ilr() invilr()

    Function to perform isometric log-ratio transformation

    - -

    tffm0() invtffm0()

    - -

    Transform formation fractions as in the first published mkin version

    logLik(<mkinfit>)

    @@ -442,7 +451,7 @@ kinetic models fitted with mkinfit

    -

    Site built with pkgdown 2.0.2.

    +

    Site built with pkgdown 2.0.6.

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