From 24eb77216700cf8b2f2bde3abad84c1f83f9e32a Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 9 Jan 2023 06:22:04 +0100 Subject: Prebuilt PDF vignettes, summary_listing --- docs/dev/reference/mkinmod.html | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) (limited to 'docs/dev/reference/mkinmod.html') diff --git a/docs/dev/reference/mkinmod.html b/docs/dev/reference/mkinmod.html index 251215a7..145dee83 100644 --- a/docs/dev/reference/mkinmod.html +++ b/docs/dev/reference/mkinmod.html @@ -132,7 +132,7 @@ the source compartment. Additionally, mkinsub() has an argument to, specifying names of variables to which a transfer is to be assumed in the model. If the argument use_of_ff is set to "min" -(default) and the model for the compartment is "SFO" or "SFORB", an +and the model for the compartment is "SFO" or "SFORB", an additional mkinsub() argument can be sink = FALSE, effectively fixing the flux to sink to zero. In print.mkinmod, this argument is currently not used.

@@ -247,7 +247,7 @@ in the FOCUS and NAFTA guidance documents are used.

For kinetic models with more than one observed variable, a symbolic solution of the system of differential equations is included in the resulting mkinmod object in some cases, speeding up the solution.

-

If a C compiler is found by pkgbuild::has_compiler() and there +

If a C compiler is found by pkgbuild::has_compiler() and there is more than one observed variable in the specification, C code is generated for evaluating the differential equations, compiled using inline::cfunction() and added to the resulting mkinmod object.

@@ -310,7 +310,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

parent = mkinsub("SFO", "m1", full_name = "Test compound"), m1 = mkinsub("SFO", full_name = "Metabolite M1"), name = "SFO_SFO", dll_dir = DLL_dir, unload = TRUE, overwrite = TRUE) -#> Copied DLL from /tmp/RtmpbZbZ8Y/file8c6a9f402f42.so to /home/jranke/.local/share/mkin/SFO_SFO.so +#> Copied DLL from /tmp/RtmpelWAOB/fileb43c31a25a86.so to /home/jranke/.local/share/mkin/SFO_SFO.so # Now we can save the model and restore it in a new session saveRDS(SFO_SFO.2, file = "~/SFO_SFO.rds") # Terminate the R session here if you would like to check, and then do @@ -363,7 +363,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

#> }) #> return(predicted) #> } -#> <environment: 0x55556029f678> +#> <environment: 0x55555f013820> # If we have several parallel metabolites # (compare tests/testthat/test_synthetic_data_for_UBA_2014.R) @@ -392,7 +392,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media

-

Site built with pkgdown 2.0.6.

+

Site built with pkgdown 2.0.7.

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