From d25974f643ee46b7cd5ccd8331dd7bb0b14ab27a Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 26 Oct 2022 09:36:44 +0200 Subject: Don't test parhist and llhist on travis, docs --- docs/dev/reference/multistart.html | 31 ++++++++++++++++++++++++------- 1 file changed, 24 insertions(+), 7 deletions(-) (limited to 'docs/dev/reference/multistart.html') diff --git a/docs/dev/reference/multistart.html b/docs/dev/reference/multistart.html index 714cb2fc..83af8dbb 100644 --- a/docs/dev/reference/multistart.html +++ b/docs/dev/reference/multistart.html @@ -112,7 +112,17 @@ mixed-effects models by Duchesne et al (2021).

multistart(object, n = 50, cores = 1, cluster = NULL, ...) # S3 method for multistart -print(x, ...) +print(x, ...) + +best(object, ...) + +# S3 method for default +best(object, ...) + +which.best(object, ...) + +# S3 method for default +which.best(object, ...)
@@ -149,6 +159,12 @@ for parallel execution.

A list of saem.mmkin objects, with class attributes 'multistart.saem.mmkin' and 'multistart'.

+ + +

The object with the highest likelihood

+ + +

The index of the object with the highest likelihood

Details

@@ -187,11 +203,14 @@ doi: 10.1186/s12859-021-04373-4.

f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE) f_saem_full <- saem(f_mmkin) f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16) -#> Warning: all scheduled cores encountered errors in user code parhist(f_saem_full_multi, lpos = "bottomright") -#> Error in UseMethod("parms", object): no applicable method for 'parms' applied to an object of class "try-error" + +illparms(f_saem_full) +#> [1] "sd(log_k2)" -f_saem_reduced <- update(f_saem_full, covariance.model = diag(c(1, 1, 0, 1))) +f_saem_reduced <- update(f_saem_full, no_random_effect = "log_k2") +illparms(f_saem_reduced) +#> character(0) # On Windows, we need to create a cluster first. When working with # such a cluster, we need to export the mmkin object to the cluster # nodes, as it is referred to when updating the saem object on the nodes. @@ -200,10 +219,8 @@ doi: 10.1186/s12859-021-04373-4.

clusterExport(cl, "f_mmkin") #> Error in get(name, envir = envir): object 'f_mmkin' not found f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cluster = cl) -#> Error in checkForRemoteErrors(val): 12 nodes produced errors; first error: object 'f_mmkin' not found parhist(f_saem_reduced_multi, lpos = "bottomright") -#> Error in parhist(f_saem_reduced_multi, lpos = "bottomright"): object 'f_saem_reduced_multi' not found -#> Warning: calling par(new=TRUE) with no plot + # }
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