From 0c9b2f0e3c8ce65cb790c9e048476784cbbea070 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 11 Jun 2021 11:14:45 +0200 Subject: Finished 'summary.nlmixr.mmkin', checks, docs --- docs/dev/reference/nlme.mmkin.html | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) (limited to 'docs/dev/reference/nlme.mmkin.html') diff --git a/docs/dev/reference/nlme.mmkin.html b/docs/dev/reference/nlme.mmkin.html index f308d8b7..2bbf4f80 100644 --- a/docs/dev/reference/nlme.mmkin.html +++ b/docs/dev/reference/nlme.mmkin.html @@ -74,7 +74,7 @@ have been obtained by fitting the same model to a list of datasets." /> mkin - 1.0.4.9000 + 1.0.5 @@ -155,11 +155,11 @@ have been obtained by fitting the same model to a list of datasets.

nlme( model, data = "auto", - fixed = lapply(as.list(names(mean_degparms(model))), function(el) eval(parse(text = + fixed = lapply(as.list(names(mean_degparms(model))), function(el) eval(parse(text = paste(el, 1, sep = "~")))), random = pdDiag(fixed), groups, - start = mean_degparms(model, random = TRUE), + start = mean_degparms(model, random = TRUE, test_log_parms = TRUE), correlation = NULL, weights = NULL, subset, @@ -350,8 +350,8 @@ methods that will automatically work on 'nlme.mmkin' objects, such as
anova(f_nlme_dfop_sfo, f_nlme_sfo_sfo)
#> Model df AIC BIC logLik Test L.Ratio p-value -#> f_nlme_dfop_sfo 1 13 843.8548 884.6201 -408.9274 -#> f_nlme_sfo_sfo 2 9 1085.1821 1113.4043 -533.5910 1 vs 2 249.3273 <.0001
+#> f_nlme_dfop_sfo 1 13 843.8547 884.6201 -408.9274 +#> f_nlme_sfo_sfo 2 9 1085.1821 1113.4043 -533.5910 1 vs 2 249.3274 <.0001
endpoints(f_nlme_sfo_sfo)
#> $ff #> parent_sink parent_A1 A1_sink @@ -364,12 +364,12 @@ methods that will automatically work on 'nlme.mmkin' objects, such as #>
endpoints(f_nlme_dfop_sfo)
#> $ff #> parent_A1 parent_sink -#> 0.2768575 0.7231425 +#> 0.2768574 0.7231426 #> #> $distimes #> DT50 DT90 DT50back DT50_k1 DT50_k2 -#> parent 11.07091 104.6320 31.49737 4.462384 46.20825 -#> A1 162.30492 539.1653 NA NA NA +#> parent 11.07091 104.6320 31.49737 4.462383 46.20825 +#> A1 162.30519 539.1662 NA NA NA #>
if (length(findFunction("varConstProp")) > 0) { # tc error model for nlme available # Attempts to fit metabolite kinetics with the tc error model are possible, @@ -452,8 +452,8 @@ methods that will automatically work on 'nlme.mmkin' objects, such as anova(f_nlme_dfop_sfo, f_nlme_dfop_sfo_obs)
#> Model df AIC BIC logLik Test L.Ratio -#> f_nlme_dfop_sfo 1 13 843.8548 884.6201 -408.9274 -#> f_nlme_dfop_sfo_obs 2 14 817.5338 861.4350 -394.7669 1 vs 2 28.32093 +#> f_nlme_dfop_sfo 1 13 843.8547 884.6201 -408.9274 +#> f_nlme_dfop_sfo_obs 2 14 817.5338 861.4350 -394.7669 1 vs 2 28.32091 #> p-value #> f_nlme_dfop_sfo #> f_nlme_dfop_sfo_obs <.0001
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