From fd205e13061de8abc595d266f3b0c7650773d442 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 16 Sep 2022 21:06:54 +0200 Subject: Improve multistart documentation, bugfix - Split out llhist and parhist documentation - Add example code for multistart - Create a multistart vignette, because the example code fails when run by pkgdown - Fix multistart for the case of mkin transformations in the saem fit --- docs/dev/reference/parhist.html | 156 ++++++++++++++++++++++++++++++++++++++++ 1 file changed, 156 insertions(+) create mode 100644 docs/dev/reference/parhist.html (limited to 'docs/dev/reference/parhist.html') diff --git a/docs/dev/reference/parhist.html b/docs/dev/reference/parhist.html new file mode 100644 index 00000000..a2fd717b --- /dev/null +++ b/docs/dev/reference/parhist.html @@ -0,0 +1,156 @@ + +Plot parameter distributions from multistart objects — parhist • mkin + + +
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Plot parameter distributions from multistart objects

+ Source: R/parhist.R + +
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Produces a boxplot with all parameters from the multiple runs, scaled using +their medians. If parameter transformations were done by mkin (default in +saem), then the parameters found by saem are on the transformed scale, and +scaling is simply done by subtracting the median. If parameter +transformations were done by saemix, scaling is done by dividing by the +median, as in the paper by Duchesne et al. (2021).

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parhist(object, lpos = "topleft", main = "", ...)
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Arguments

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object
+

The multistart object

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lpos
+

Positioning of the legend.

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main
+

Title of the plot

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...
+

Passed to boxplot

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References

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Duchesne R, Guillemin A, Gandrillon O, Crauste F. Practical +identifiability in the frame of nonlinear mixed effects models: the example +of the in vitro erythropoiesis. BMC Bioinformatics. 2021 Oct 4;22(1):478. +doi: 10.1186/s12859-021-04373-4.

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See also

+

multistart

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+ + + + + + + + -- cgit v1.2.1