From 6476f5f49b373cd4cf05f2e73389df83e437d597 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 13 Feb 2025 16:30:31 +0100 Subject: Axis legend formatting, update vignettes --- docs/dev/reference/parplot.html | 205 ---------------------------------------- 1 file changed, 205 deletions(-) delete mode 100644 docs/dev/reference/parplot.html (limited to 'docs/dev/reference/parplot.html') diff --git a/docs/dev/reference/parplot.html b/docs/dev/reference/parplot.html deleted file mode 100644 index ee2ec7b2..00000000 --- a/docs/dev/reference/parplot.html +++ /dev/null @@ -1,205 +0,0 @@ - -Plot parameter variability of multistart objects — parplot • mkin - - -
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Plot parameter variability of multistart objects

- Source: R/parplot.R - -
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Produces a boxplot with all parameters from the multiple runs, scaled -either by the parameters of the run with the highest likelihood, -or by their medians as proposed in the paper by Duchesne et al. (2021).

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- -
- 
parplot(object, ...)
-
-# S3 method for multistart.saem.mmkin
-parplot(
-  object,
-  llmin = -Inf,
-  llquant = NA,
-  scale = c("best", "median"),
-  lpos = "bottomleft",
-  main = "",
-  ...
-)
-
- -
-

Arguments

-
object
-

The multistart object

- - -
...
-

Passed to boxplot

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llmin
-

The minimum likelihood of objects to be shown

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llquant
-

Fractional value for selecting only the fits with higher -likelihoods. Overrides 'llmin'.

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scale
-

By default, scale parameters using the best -available fit. -If 'median', parameters are scaled using the median parameters from all fits.

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lpos
-

Positioning of the legend.

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main
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Title of the plot

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Details

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Starting values of degradation model parameters and error model parameters -are shown as green circles. The results obtained in the original run -are shown as red circles.

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References

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Duchesne R, Guillemin A, Gandrillon O, Crauste F. Practical -identifiability in the frame of nonlinear mixed effects models: the example -of the in vitro erythropoiesis. BMC Bioinformatics. 2021 Oct 4;22(1):478. -doi: 10.1186/s12859-021-04373-4.

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See also

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multistart

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