From af7c6de4db9981ac814362c441fbac22c8faa2d7 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Thu, 24 Nov 2022 09:02:26 +0100
Subject: Start online docs of the development version

---
 docs/dev/reference/parplot.html | 13 +++++++++++--
 1 file changed, 11 insertions(+), 2 deletions(-)

(limited to 'docs/dev/reference/parplot.html')

diff --git a/docs/dev/reference/parplot.html b/docs/dev/reference/parplot.html
index ffe93e6c..9852b694 100644
--- a/docs/dev/reference/parplot.html
+++ b/docs/dev/reference/parplot.html
@@ -19,7 +19,7 @@ or by their medians as proposed in the paper by Duchesne et al. (2021)."><meta n
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.0</span>
+        <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.2.2</span>
       </span>
     </div>
 
@@ -61,7 +61,10 @@ or by their medians as proposed in the paper by Duchesne et al. (2021)."><meta n
       <a href="../articles/web_only/NAFTA_examples.html">Example evaluation of NAFTA SOP Attachment examples</a>
     </li>
     <li>
-      <a href="../articles/web_only/benchmarks.html">Some benchmark timings</a>
+      <a href="../articles/web_only/benchmarks.html">Benchmark timings for mkin</a>
+    </li>
+    <li>
+      <a href="../articles/web_only/saem_benchmarks.html">Benchmark timings for saem.mmkin</a>
     </li>
   </ul></li>
 <li>
@@ -134,6 +137,12 @@ If 'median', parameters are scaled using the median parameters from all fits.</p
 <dd><p>Title of the plot</p></dd>
 
 </dl></div>
+    <div id="details">
+    <h2>Details</h2>
+    <p>Starting values of degradation model parameters and error model parameters
+are shown as green circles. The results obtained in the original run
+are shown as red circles.</p>
+    </div>
     <div id="references">
     <h2>References</h2>
     <p>Duchesne R, Guillemin A, Gandrillon O, Crauste F. Practical
-- 
cgit v1.2.1


From a54bd290bc3884d0000c52c1b29bc557825d9eae Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Thu, 15 Dec 2022 14:50:28 +0100
Subject: List random effects correlations in output if any

Update docs
---
 docs/dev/reference/parplot.html | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

(limited to 'docs/dev/reference/parplot.html')

diff --git a/docs/dev/reference/parplot.html b/docs/dev/reference/parplot.html
index 9852b694..720c0b2a 100644
--- a/docs/dev/reference/parplot.html
+++ b/docs/dev/reference/parplot.html
@@ -103,6 +103,7 @@ or by their medians as proposed in the paper by Duchesne et al. (2021).</p>
 <span><span class="fu">parplot</span><span class="op">(</span></span>
 <span>  <span class="va">object</span>,</span>
 <span>  llmin <span class="op">=</span> <span class="op">-</span><span class="cn">Inf</span>,</span>
+<span>  llquant <span class="op">=</span> <span class="cn">NA</span>,</span>
 <span>  scale <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"best"</span>, <span class="st">"median"</span><span class="op">)</span>,</span>
 <span>  lpos <span class="op">=</span> <span class="st">"bottomleft"</span>,</span>
 <span>  main <span class="op">=</span> <span class="st">""</span>,</span>
@@ -124,8 +125,14 @@ or by their medians as proposed in the paper by Duchesne et al. (2021).</p>
 <dd><p>The minimum likelihood of objects to be shown</p></dd>
 
 
+<dt>llquant</dt>
+<dd><p>Fractional value for selecting only the fits with higher
+likelihoods. Overrides 'llmin'.</p></dd>
+
+
 <dt>scale</dt>
-<dd><p>By default, scale parameters using the best available fit.
+<dd><p>By default, scale parameters using the best
+available fit.
 If 'median', parameters are scaled using the median parameters from all fits.</p></dd>
 
 
-- 
cgit v1.2.1