From 524a8bba89b95840b4e9215c403947a8bb76d7b2 Mon Sep 17 00:00:00 2001
From: Johannes Ranke
Date: Mon, 30 Nov 2020 16:05:10 +0100
Subject: Complete rebuild of static docs of dev version
---
docs/dev/reference/saem.html | 52 ++++++++++++++++++++++----------------------
1 file changed, 26 insertions(+), 26 deletions(-)
(limited to 'docs/dev/reference/saem.html')
diff --git a/docs/dev/reference/saem.html b/docs/dev/reference/saem.html
index 948e1378..e4ebf5d9 100644
--- a/docs/dev/reference/saem.html
+++ b/docs/dev/reference/saem.html
@@ -247,27 +247,27 @@ using mmkin.
state.ini = c(parent = 100), fixed_initials = "parent", quiet = TRUE)
f_saem_p0_fixed <- saem(f_mmkin_parent_p0_fixed)
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:51:31 2020"
+#> [1] "Mon Nov 30 15:53:02 2020"
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:51:33 2020"
+#> [1] "Mon Nov 30 15:53:04 2020"
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:51:34 2020"
+#> [1] "Mon Nov 30 15:53:05 2020"
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:51:36 2020"
f_saem_fomc <- saem(f_mmkin_parent["FOMC", ])
+#> [1] "Mon Nov 30 15:53:07 2020"
f_saem_fomc <- saem(f_mmkin_parent["FOMC", ])
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:51:36 2020"
+#> [1] "Mon Nov 30 15:53:07 2020"
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:51:38 2020"
f_saem_dfop <- saem(f_mmkin_parent["DFOP", ])
+#> [1] "Mon Nov 30 15:53:09 2020"
f_saem_dfop <- saem(f_mmkin_parent["DFOP", ])
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:51:39 2020"
+#> [1] "Mon Nov 30 15:53:10 2020"
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:51:42 2020"
+#> [1] "Mon Nov 30 15:53:13 2020"
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:51:44 2020"
+#> [1] "Mon Nov 30 15:53:15 2020"
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:51:49 2020"
#> Likelihoods computed by importance sampling
#> AIC BIC
#> 1 467.7096 464.9757
#> 2 469.5208 466.3963
#> Successfully compiled differential equation model from auto-generated C code.
#> Successfully compiled differential equation model from auto-generated C code.
#> Successfully compiled differential equation model from auto-generated C code.
#> Temporary DLL for differentials generated and loaded
#> Temporary DLL for differentials generated and loaded
#> Temporary DLL for differentials generated and loaded
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:51:52 2020"
+#> [1] "Mon Nov 30 15:53:23 2020"
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:51:57 2020"
f_saem_dfop_sfo <- saem(f_mmkin["DFOP-SFO", ])
+#> [1] "Mon Nov 30 15:53:28 2020"
f_saem_dfop_sfo <- saem(f_mmkin["DFOP-SFO", ])
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:51:57 2020"
+#> [1] "Mon Nov 30 15:53:29 2020"
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:52:06 2020"
# We can use print, plot and summary methods to check the results
+#> [1] "Mon Nov 30 15:53:38 2020"
#> Kinetic nonlinear mixed-effects model fit by SAEM
#> Structural model:
@@ -387,8 +387,8 @@ using
mmkin.
#> saemix version used for fitting: 3.1.9000
#> mkin version used for pre-fitting: 0.9.50.4
#> R version used for fitting: 4.0.3
-#> Date of fit: Thu Nov 19 14:52:07 2020
-#> Date of summary: Thu Nov 19 14:52:07 2020
+#> Date of fit: Mon Nov 30 15:53:38 2020
+#> Date of summary: Mon Nov 30 15:53:39 2020
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -403,7 +403,7 @@ using
mmkin.
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 10.034 s using 300, 100 iterations
+#> Fitted in 9.963 s using 300, 100 iterations
#>
#> Variance model: Constant variance
#>
@@ -647,7 +647,7 @@ using
mmkin.
# analytical solution. Using 10 cores it is slower instead of faster
f_saem_fomc <- saem(f_mmkin["FOMC-SFO",
], cores
= 1)
#> Running main SAEM algorithm
-#> [1] "Thu Nov 19 14:52:08 2020"
+#> [1] "Mon Nov 30 15:53:39 2020"
#> DLSODA- At current T (=R1), MXSTEP (=I1) steps
#> taken on this call before reaching TOUT
#> In above message, I1 = 5000
@@ -667,7 +667,7 @@ using
mmkin.
#>
#> ....
#> Minimisation finished
-#> [1] "Thu Nov 19 14:59:05 2020"
# }
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