From 7094934f1061563725f6caa8723dc3e23c8ca677 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 16 Nov 2022 11:30:06 +0100 Subject: Update online docs --- docs/dev/reference/saem.html | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'docs/dev/reference/saem.html') diff --git a/docs/dev/reference/saem.html b/docs/dev/reference/saem.html index 73382cba..d2e930e1 100644 --- a/docs/dev/reference/saem.html +++ b/docs/dev/reference/saem.html @@ -432,8 +432,8 @@ using mmkin.

#> saemix version used for fitting: 3.2 #> mkin version used for pre-fitting: 1.2.0 #> R version used for fitting: 4.2.2 -#> Date of fit: Tue Nov 15 00:45:58 2022 -#> Date of summary: Tue Nov 15 00:45:58 2022 +#> Date of fit: Wed Nov 16 10:49:43 2022 +#> Date of summary: Wed Nov 16 10:49:43 2022 #> #> Equations: #> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -448,7 +448,7 @@ using mmkin.

#> #> Model predictions using solution type analytical #> -#> Fitted in 9.189 s +#> Fitted in 8.935 s #> Using 300, 100 iterations and 10 chains #> #> Variance model: Constant variance -- cgit v1.2.1 From af7c6de4db9981ac814362c441fbac22c8faa2d7 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 24 Nov 2022 09:02:26 +0100 Subject: Start online docs of the development version --- docs/dev/reference/saem.html | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) (limited to 'docs/dev/reference/saem.html') diff --git a/docs/dev/reference/saem.html b/docs/dev/reference/saem.html index d2e930e1..d18cb848 100644 --- a/docs/dev/reference/saem.html +++ b/docs/dev/reference/saem.html @@ -19,7 +19,7 @@ Expectation Maximisation algorithm (SAEM)."> mkin - 1.2.0 + 1.2.2 @@ -113,7 +113,7 @@ Expectation Maximisation algorithm (SAEM).

covariates = NULL, covariate_models = NULL, no_random_effect = NULL, - error.init = c(3, 0.1), + error.init = c(1, 1), nbiter.saemix = c(300, 100), control = list(displayProgress = FALSE, print = FALSE, nbiter.saemix = nbiter.saemix, save = FALSE, save.graphs = FALSE), @@ -430,10 +430,10 @@ using mmkin.

summary(f_saem_dfop_sfo, data = TRUE) #> saemix version used for fitting: 3.2 -#> mkin version used for pre-fitting: 1.2.0 +#> mkin version used for pre-fitting: 1.2.2 #> R version used for fitting: 4.2.2 -#> Date of fit: Wed Nov 16 10:49:43 2022 -#> Date of summary: Wed Nov 16 10:49:43 2022 +#> Date of fit: Thu Nov 24 08:11:00 2022 +#> Date of summary: Thu Nov 24 08:11:01 2022 #> #> Equations: #> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -448,7 +448,7 @@ using mmkin.

#> #> Model predictions using solution type analytical #> -#> Fitted in 8.935 s +#> Fitted in 8.778 s #> Using 300, 100 iterations and 10 chains #> #> Variance model: Constant variance -- cgit v1.2.1 From a54bd290bc3884d0000c52c1b29bc557825d9eae Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 15 Dec 2022 14:50:28 +0100 Subject: List random effects correlations in output if any Update docs --- docs/dev/reference/saem.html | 21 +++++++++++++++++---- 1 file changed, 17 insertions(+), 4 deletions(-) (limited to 'docs/dev/reference/saem.html') diff --git a/docs/dev/reference/saem.html b/docs/dev/reference/saem.html index d18cb848..131b168b 100644 --- a/docs/dev/reference/saem.html +++ b/docs/dev/reference/saem.html @@ -432,8 +432,8 @@ using mmkin.

#> saemix version used for fitting: 3.2 #> mkin version used for pre-fitting: 1.2.2 #> R version used for fitting: 4.2.2 -#> Date of fit: Thu Nov 24 08:11:00 2022 -#> Date of summary: Thu Nov 24 08:11:01 2022 +#> Date of fit: Wed Dec 7 16:22:26 2022 +#> Date of summary: Wed Dec 7 16:22:26 2022 #> #> Equations: #> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -448,12 +448,12 @@ using mmkin.

#> #> Model predictions using solution type analytical #> -#> Fitted in 8.778 s +#> Fitted in 8.508 s #> Using 300, 100 iterations and 10 chains #> #> Variance model: Constant variance #> -#> Mean of starting values for individual parameters: +#> Starting values for degradation parameters: #> parent_0 log_k_A1 f_parent_qlogis log_k1 log_k2 #> 93.8102 -5.3734 -0.9711 -1.8799 -4.2708 #> g_qlogis @@ -462,6 +462,19 @@ using mmkin.

#> Fixed degradation parameter values: #> None #> +#> Starting values for random effects (square root of initial entries in omega): +#> parent_0 log_k_A1 f_parent_qlogis log_k1 log_k2 g_qlogis +#> parent_0 4.941 0.000 0.0000 0.000 0.000 0.0000 +#> log_k_A1 0.000 2.551 0.0000 0.000 0.000 0.0000 +#> f_parent_qlogis 0.000 0.000 0.7251 0.000 0.000 0.0000 +#> log_k1 0.000 0.000 0.0000 1.449 0.000 0.0000 +#> log_k2 0.000 0.000 0.0000 0.000 2.228 0.0000 +#> g_qlogis 0.000 0.000 0.0000 0.000 0.000 0.7814 +#> +#> Starting values for error model parameters: +#> a.1 +#> 1 +#> #> Results: #> #> Likelihood computed by importance sampling -- cgit v1.2.1