From 9298a503d8de99dad1f61d6eb8bc228dd4acce6b Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 5 Nov 2020 08:31:21 +0100 Subject: Fix link and update docs --- docs/dev/reference/saemix.html | 35 +++++++++++++++++++---------------- 1 file changed, 19 insertions(+), 16 deletions(-) (limited to 'docs/dev/reference/saemix.html') diff --git a/docs/dev/reference/saemix.html b/docs/dev/reference/saemix.html index 2c4fd2d7..c8cf9fab 100644 --- a/docs/dev/reference/saemix.html +++ b/docs/dev/reference/saemix.html @@ -153,7 +153,7 @@ list of mkinfit objects that have been obtained by fitting the same model to a list of datasets.

- 
saemix_model(object, cores = parallel::detectCores())
+    
saemix_model(object, cores = 1)
 
 saemix_data(object, ...)

 
@@ -162,12 +162,15 @@ a list of datasets.

     
     
       object
-      
An mmkin row object containing several fits of the same model to different datasets

+      
An mmkin row object containing several fits of the same model
+to different datasets

     
     
       cores
-      
The number of cores to be used for multicore processing.
-On Windows machines, cores > 1 is currently not supported.

+      
The number of cores to be used for multicore processing using
+parallel::mclapply(). Using more than 1 core is experimental and may
+lead to uncontrolled forking, apparently depending on the BLAS version
+used.

     
     
       ...
@@ -237,8 +240,8 @@ variances of the deviations of the parameters from these mean values.

 #>     res <- unlist(res_list)
 #>     return(res)
 #> }
-#> <bytecode: 0x555555c89340>
-#> <environment: 0x555555c82680>
+#> <bytecode: 0x55555d62aeb8>
+#> <environment: 0x55555e35c170>
 #>   Nb of parameters: 4 
 #>       parameter names:  parent_0 log_k_parent log_k_A1 f_parent_ilr_1 
 #>       distribution:
@@ -271,10 +274,10 @@ variances of the deviations of the parameters from these mean values.

   nbiter.saemix = c(200, 80))
 f_saemix <- saemix(m_saemix, d_saemix, saemix_options)
 
#> Running main SAEM algorithm
-#> [1] "Thu Oct 15 14:51:26 2020"
+#> [1] "Thu Nov  5 08:26:39 2020"
 #> ..
 #>     Minimisation finished
-#> [1] "Thu Oct 15 14:53:18 2020"
#> Nonlinear mixed-effects model fit by the SAEM algorithm
+#> [1] "Thu Nov  5 08:28:33 2020"
#> Nonlinear mixed-effects model fit by the SAEM algorithm
 #> -----------------------------------
 #> ----          Data             ----
 #> -----------------------------------
@@ -338,8 +341,8 @@ variances of the deviations of the parameters from these mean values.

 #>     res <- unlist(res_list)
 #>     return(res)
 #> }
-#> <bytecode: 0x555555c89340>
-#> <environment: 0x555555c82680>
+#> <bytecode: 0x55555d62aeb8>
+#> <environment: 0x55555e35c170>
 #>   Nb of parameters: 4 
 #>       parameter names:  parent_0 log_k_parent log_k_A1 f_parent_ilr_1 
 #>       distribution:
@@ -483,8 +486,8 @@ variances of the deviations of the parameters from these mean values.

 #>     res <- unlist(res_list)
 #>     return(res)
 #> }
-#> <bytecode: 0x555555c89340>
-#> <environment: 0x55555df58cf8>
+#> <bytecode: 0x55555d62aeb8>
+#> <environment: 0x55555cd8e028>
 #>   Nb of parameters: 2 
 #>       parameter names:  parent_0 log_k_parent 
 #>       distribution:
@@ -510,10 +513,10 @@ variances of the deviations of the parameters from these mean values.

 #>     Structured data: value ~ time + name | ds 
 #>     X variable for graphs: time () 
f_saemix_tc <- saemix(m_saemix_tc, d_saemix_tc, saemix_options)
 
#> Running main SAEM algorithm
-#> [1] "Thu Oct 15 14:53:35 2020"
+#> [1] "Thu Nov  5 08:28:50 2020"
 #> ..
 #>     Minimisation finished
-#> [1] "Thu Oct 15 14:54:25 2020"
#> Nonlinear mixed-effects model fit by the SAEM algorithm
+#> [1] "Thu Nov  5 08:29:41 2020"
#> Nonlinear mixed-effects model fit by the SAEM algorithm
 #> -----------------------------------
 #> ----          Data             ----
 #> -----------------------------------
@@ -577,8 +580,8 @@ variances of the deviations of the parameters from these mean values.

 #>     res <- unlist(res_list)
 #>     return(res)
 #> }
-#> <bytecode: 0x555555c89340>
-#> <environment: 0x55555df58cf8>
+#> <bytecode: 0x55555d62aeb8>
+#> <environment: 0x55555cd8e028>
 #>   Nb of parameters: 2 
 #>       parameter names:  parent_0 log_k_parent 
 #>       distribution:
-- 
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