From 48c463680b51fa767b4cd7bd62865f192d0354ac Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sat, 6 Feb 2021 18:30:32 +0100
Subject: Reintroduce interface to saemix
Also after the upgrade from buster to bullseye of my local system, some
test results for saemix have changed.
---
docs/dev/reference/summary.saem.mmkin.html | 426 ++++++++++++++---------------
1 file changed, 213 insertions(+), 213 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index 722415fb..93e1365d 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -76,7 +76,7 @@ endpoints such as formation fractions and DT50 values. Optionally
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.4</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.1.9000</span>
</span>
</div>
@@ -260,15 +260,15 @@ saemix authors for the parts inherited from saemix.</p>
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Mon Jan 11 12:42:40 2021"
+#> [1] "Sat Feb 6 18:30:00 2021"
#> ....
#> Minimisation finished
-#> [1] "Mon Jan 11 12:42:53 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+#> [1] "Sat Feb 6 18:30:11 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
-#> mkin version used for pre-fitting: 0.9.50.4
+#> mkin version used for pre-fitting: 1.0.1.9000
#> R version used for fitting: 4.0.3
-#> Date of fit: Mon Jan 11 12:42:54 2021
-#> Date of summary: Mon Jan 11 12:42:54 2021
+#> Date of fit: Sat Feb 6 18:30:12 2021
+#> Date of summary: Sat Feb 6 18:30:12 2021
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -283,7 +283,7 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 13.298 s using 300, 100 iterations
+#> Fitted in 11.769 s using 300, 100 iterations
#>
#> Variance model: Two-component variance function
#>
@@ -291,7 +291,7 @@ saemix authors for the parts inherited from saemix.</p>
#> parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
#> 101.65645 -4.05368 -0.94311 -2.35943 -4.07006
#> g_qlogis
-#> -0.01133
+#> -0.01132
#>
#> Fixed degradation parameter values:
#> None
@@ -299,232 +299,232 @@ saemix authors for the parts inherited from saemix.</p>
#> Results:
#>
#> Likelihood computed by importance sampling
-#> AIC BIC logLik
-#> 830 824.5 -401
+#> AIC BIC logLik
+#> 829.3 823.9 -400.7
#>
#> Optimised parameters:
-#> est. lower upper
-#> parent_0 101.4423 97.862 105.0224
-#> log_k_m1 -4.0703 -4.191 -3.9495
-#> f_parent_qlogis -0.9539 -1.313 -0.5949
-#> log_k1 -2.9724 -3.811 -2.1342
-#> log_k2 -3.4977 -4.206 -2.7895
-#> g_qlogis -0.0449 -1.116 1.0262
+#> est. lower upper
+#> parent_0 101.29457 97.855 104.7344
+#> log_k_m1 -4.06337 -4.182 -3.9445
+#> f_parent_qlogis -0.94546 -1.307 -0.5841
+#> log_k1 -2.98794 -3.844 -2.1321
+#> log_k2 -3.47891 -4.253 -2.7050
+#> g_qlogis -0.03211 -1.157 1.0931
#>
#> Correlation:
#> prnt_0 lg_k_1 f_prn_ log_k1 log_k2
-#> log_k_m1 -0.207
-#> f_parent_qlogis -0.148 0.202
-#> log_k1 0.040 -0.038 -0.022
-#> log_k2 0.022 -0.015 -0.009 0.001
-#> g_qlogis -0.012 0.005 0.011 -0.173 -0.130
+#> log_k_m1 -0.202
+#> f_parent_qlogis -0.145 0.195
+#> log_k1 0.094 -0.099 -0.049
+#> log_k2 -0.042 0.056 0.024 -0.097
+#> g_qlogis -0.005 0.000 0.007 -0.160 -0.113
#>
#> Random effects:
-#> est. lower upper
-#> SD.parent_0 2.88564 -0.5163 6.2876
-#> SD.log_k_m1 0.08502 -0.0427 0.2127
-#> SD.f_parent_qlogis 0.38857 0.1350 0.6421
-#> SD.log_k1 0.92338 0.3296 1.5172
-#> SD.log_k2 0.78644 0.2817 1.2912
-#> SD.g_qlogis 0.34614 -0.8727 1.5650
+#> est. lower upper
+#> SD.parent_0 2.70085 -0.64980 6.0515
+#> SD.log_k_m1 0.08408 -0.04023 0.2084
+#> SD.f_parent_qlogis 0.39215 0.13695 0.6473
+#> SD.log_k1 0.89280 0.27466 1.5109
+#> SD.log_k2 0.82387 0.26388 1.3838
+#> SD.g_qlogis 0.36468 -0.86978 1.5991
#>
#> Variance model:
#> est. lower upper
-#> a.1 0.65859 0.49250 0.82469
-#> b.1 0.06411 0.05006 0.07817
+#> a.1 0.65724 0.49361 0.82086
+#> b.1 0.06434 0.05034 0.07835
#>
#> Backtransformed parameters:
#> est. lower upper
-#> parent_0 101.44231 97.86220 105.02241
-#> k_m1 0.01707 0.01513 0.01926
-#> f_parent_to_m1 0.27811 0.21201 0.35551
-#> k1 0.05118 0.02213 0.11834
-#> k2 0.03027 0.01491 0.06145
-#> g 0.48878 0.24675 0.73618
+#> parent_0 101.29457 97.85477 104.73437
+#> k_m1 0.01719 0.01526 0.01936
+#> f_parent_to_m1 0.27980 0.21302 0.35798
+#> k1 0.05039 0.02141 0.11859
+#> k2 0.03084 0.01422 0.06687
+#> g 0.49197 0.23916 0.74896
#>
#> Resulting formation fractions:
#> ff
-#> parent_m1 0.2781
-#> parent_sink 0.7219
+#> parent_m1 0.2798
+#> parent_sink 0.7202
#>
#> Estimated disappearance times:
#> DT50 DT90 DT50back DT50_k1 DT50_k2
-#> parent 17.53 61.64 18.55 13.54 22.9
-#> m1 40.60 134.88 NA NA NA
+#> parent 17.49 61.05 18.38 13.76 22.47
+#> m1 40.32 133.94 NA NA NA
#>
#> Data:
-#> ds name time observed predicted residual std standardized
-#> ds 1 parent 0 89.8 9.869e+01 8.894553 6.3618 1.398124
-#> ds 1 parent 0 104.1 9.869e+01 -5.405447 6.3618 -0.849676
-#> ds 1 parent 1 88.7 9.413e+01 5.426448 6.0706 0.893897
-#> ds 1 parent 1 95.5 9.413e+01 -1.373552 6.0706 -0.226265
-#> ds 1 parent 3 81.8 8.576e+01 3.961821 5.5377 0.715422
-#> ds 1 parent 3 94.5 8.576e+01 -8.738179 5.5377 -1.577932
-#> ds 1 parent 7 71.5 7.168e+01 0.184828 4.6429 0.039809
-#> ds 1 parent 7 70.3 7.168e+01 1.384828 4.6429 0.298270
-#> ds 1 parent 14 54.2 5.351e+01 -0.688235 3.4934 -0.197008
-#> ds 1 parent 14 49.6 5.351e+01 3.911765 3.4934 1.119747
-#> ds 1 parent 28 31.5 3.209e+01 0.590445 2.1603 0.273322
-#> ds 1 parent 28 28.8 3.209e+01 3.290445 2.1603 1.523177
-#> ds 1 parent 60 12.1 1.272e+01 0.618158 1.0481 0.589761
-#> ds 1 parent 60 13.6 1.272e+01 -0.881842 1.0481 -0.841332
-#> ds 1 parent 90 6.2 6.085e+00 -0.115212 0.7655 -0.150512
-#> ds 1 parent 90 8.3 6.085e+00 -2.215212 0.7655 -2.893953
-#> ds 1 parent 120 2.2 3.009e+00 0.809439 0.6863 1.179470
-#> ds 1 parent 120 2.4 3.009e+00 0.609439 0.6863 0.888041
-#> ds 1 m1 1 0.3 1.129e+00 0.828817 0.6626 1.250938
-#> ds 1 m1 1 0.2 1.129e+00 0.928817 0.6626 1.401869
-#> ds 1 m1 3 2.2 3.141e+00 0.940880 0.6887 1.366187
-#> ds 1 m1 3 3.0 3.141e+00 0.140880 0.6887 0.204562
-#> ds 1 m1 7 6.5 6.326e+00 -0.174162 0.7735 -0.225175
-#> ds 1 m1 7 5.0 6.326e+00 1.325838 0.7735 1.714181
-#> ds 1 m1 14 10.2 9.883e+00 -0.317417 0.9139 -0.347326
-#> ds 1 m1 14 9.5 9.883e+00 0.382583 0.9139 0.418631
-#> ds 1 m1 28 12.2 1.251e+01 0.309856 1.0378 0.298572
-#> ds 1 m1 28 13.4 1.251e+01 -0.890144 1.0378 -0.857726
-#> ds 1 m1 60 11.8 1.086e+01 -0.940009 0.9584 -0.980812
-#> ds 1 m1 60 13.2 1.086e+01 -2.340009 0.9584 -2.441581
-#> ds 1 m1 90 6.6 7.823e+00 1.222977 0.8278 1.477332
-#> ds 1 m1 90 9.3 7.823e+00 -1.477023 0.8278 -1.784214
-#> ds 1 m1 120 3.5 5.315e+00 1.815201 0.7415 2.447906
-#> ds 1 m1 120 5.4 5.315e+00 -0.084799 0.7415 -0.114356
-#> ds 2 parent 0 118.0 1.031e+02 -14.876736 6.6443 -2.239038
-#> ds 2 parent 0 99.8 1.031e+02 3.323264 6.6443 0.500171
-#> ds 2 parent 1 90.2 9.757e+01 7.371379 6.2902 1.171891
-#> ds 2 parent 1 94.6 9.757e+01 2.971379 6.2902 0.472386
-#> ds 2 parent 3 96.1 8.788e+01 -8.222746 5.6724 -1.449599
-#> ds 2 parent 3 78.4 8.788e+01 9.477254 5.6724 1.670758
-#> ds 2 parent 7 77.9 7.293e+01 -4.972272 4.7218 -1.053054
-#> ds 2 parent 7 77.7 7.293e+01 -4.772272 4.7218 -1.010697
-#> ds 2 parent 14 56.0 5.602e+01 0.016773 3.6513 0.004594
-#> ds 2 parent 14 54.7 5.602e+01 1.316773 3.6513 0.360633
-#> ds 2 parent 28 36.6 3.855e+01 1.945779 2.5575 0.760803
-#> ds 2 parent 28 36.8 3.855e+01 1.745779 2.5575 0.682603
-#> ds 2 parent 60 22.1 2.101e+01 -1.086693 1.4996 -0.724663
-#> ds 2 parent 60 24.7 2.101e+01 -3.686693 1.4996 -2.458475
-#> ds 2 parent 90 12.4 1.246e+01 0.058759 1.0353 0.056757
-#> ds 2 parent 90 10.8 1.246e+01 1.658759 1.0353 1.602256
-#> ds 2 parent 120 6.8 7.406e+00 0.606226 0.8119 0.746659
-#> ds 2 parent 120 7.9 7.406e+00 -0.493774 0.8119 -0.608157
-#> ds 2 m1 1 1.3 1.438e+00 0.138236 0.6650 0.207869
-#> ds 2 m1 3 3.7 3.879e+00 0.178617 0.7040 0.253726
-#> ds 2 m1 3 4.7 3.879e+00 -0.821383 0.7040 -1.166780
-#> ds 2 m1 7 8.1 7.389e+00 -0.710951 0.8113 -0.876337
-#> ds 2 m1 7 7.9 7.389e+00 -0.510951 0.8113 -0.629812
-#> ds 2 m1 14 10.1 1.069e+01 0.593533 0.9507 0.624328
-#> ds 2 m1 14 10.3 1.069e+01 0.393533 0.9507 0.413951
-#> ds 2 m1 28 10.7 1.240e+01 1.703647 1.0325 1.649956
-#> ds 2 m1 28 12.2 1.240e+01 0.203647 1.0325 0.197229
-#> ds 2 m1 60 10.7 1.055e+01 -0.147672 0.9442 -0.156405
-#> ds 2 m1 60 12.5 1.055e+01 -1.947672 0.9442 -2.062848
-#> ds 2 m1 90 9.1 8.010e+00 -1.090041 0.8351 -1.305210
-#> ds 2 m1 90 7.4 8.010e+00 0.609959 0.8351 0.730362
-#> ds 2 m1 120 6.1 5.793e+00 -0.306797 0.7561 -0.405759
-#> ds 2 m1 120 4.5 5.793e+00 1.293203 0.7561 1.710347
-#> ds 3 parent 0 106.2 1.035e+02 -2.712344 6.6675 -0.406801
-#> ds 3 parent 0 106.9 1.035e+02 -3.412344 6.6675 -0.511788
-#> ds 3 parent 1 107.4 9.548e+01 -11.924044 6.1566 -1.936801
-#> ds 3 parent 1 96.1 9.548e+01 -0.624044 6.1566 -0.101362
-#> ds 3 parent 3 79.4 8.246e+01 3.056105 5.3274 0.573662
-#> ds 3 parent 3 82.6 8.246e+01 -0.143895 5.3274 -0.027010
-#> ds 3 parent 7 63.9 6.489e+01 0.991141 4.2122 0.235304
-#> ds 3 parent 7 62.4 6.489e+01 2.491141 4.2122 0.591416
-#> ds 3 parent 14 51.0 4.869e+01 -2.306824 3.1906 -0.723013
-#> ds 3 parent 14 47.1 4.869e+01 1.593176 3.1906 0.499338
-#> ds 3 parent 28 36.1 3.480e+01 -1.304261 2.3260 -0.560722
-#> ds 3 parent 28 36.6 3.480e+01 -1.804261 2.3260 -0.775679
-#> ds 3 parent 60 20.1 1.988e+01 -0.221952 1.4346 -0.154719
-#> ds 3 parent 60 19.8 1.988e+01 0.078048 1.4346 0.054406
-#> ds 3 parent 90 11.3 1.194e+01 0.642458 1.0099 0.636132
-#> ds 3 parent 90 10.7 1.194e+01 1.242458 1.0099 1.230224
-#> ds 3 parent 120 8.2 7.176e+00 -1.023847 0.8034 -1.274423
-#> ds 3 parent 120 7.3 7.176e+00 -0.123847 0.8034 -0.154158
-#> ds 3 m1 0 0.8 8.527e-13 -0.800000 0.6586 -1.214712
-#> ds 3 m1 1 1.8 1.856e+00 0.055925 0.6693 0.083562
-#> ds 3 m1 1 2.3 1.856e+00 -0.444075 0.6693 -0.663537
-#> ds 3 m1 3 4.2 4.780e+00 0.580164 0.7264 0.798676
-#> ds 3 m1 3 4.1 4.780e+00 0.680164 0.7264 0.936340
-#> ds 3 m1 7 6.8 8.410e+00 1.609920 0.8512 1.891455
-#> ds 3 m1 7 10.1 8.410e+00 -1.690080 0.8512 -1.985633
-#> ds 3 m1 14 11.4 1.098e+01 -0.424444 0.9638 -0.440389
-#> ds 3 m1 14 12.8 1.098e+01 -1.824444 0.9638 -1.892979
-#> ds 3 m1 28 11.5 1.142e+01 -0.079336 0.9848 -0.080558
-#> ds 3 m1 28 10.6 1.142e+01 0.820664 0.9848 0.833311
-#> ds 3 m1 60 7.5 9.110e+00 1.610231 0.8803 1.829222
-#> ds 3 m1 60 8.6 9.110e+00 0.510231 0.8803 0.579622
-#> ds 3 m1 90 7.3 6.799e+00 -0.501085 0.7898 -0.634463
-#> ds 3 m1 90 8.1 6.799e+00 -1.301085 0.7898 -1.647404
-#> ds 3 m1 120 5.3 4.868e+00 -0.431505 0.7288 -0.592064
-#> ds 3 m1 120 3.8 4.868e+00 1.068495 0.7288 1.466073
-#> ds 4 parent 0 104.7 9.926e+01 -5.444622 6.3975 -0.851049
-#> ds 4 parent 0 88.3 9.926e+01 10.955378 6.3975 1.712436
-#> ds 4 parent 1 94.2 9.618e+01 1.978413 6.2013 0.319030
-#> ds 4 parent 1 94.6 9.618e+01 1.578413 6.2013 0.254527
-#> ds 4 parent 3 78.1 9.037e+01 12.268550 5.8311 2.103985
-#> ds 4 parent 3 96.5 9.037e+01 -6.131450 5.8311 -1.051508
-#> ds 4 parent 7 76.2 7.999e+01 3.794958 5.1708 0.733918
-#> ds 4 parent 7 77.8 7.999e+01 2.194958 5.1708 0.424489
-#> ds 4 parent 14 70.8 6.518e+01 -5.624996 4.2301 -1.329742
-#> ds 4 parent 14 67.3 6.518e+01 -2.124996 4.2301 -0.502346
-#> ds 4 parent 28 43.1 4.462e+01 1.517860 2.9354 0.517085
-#> ds 4 parent 28 45.1 4.462e+01 -0.482140 2.9354 -0.164249
-#> ds 4 parent 60 21.3 2.130e+01 -0.003305 1.5159 -0.002180
-#> ds 4 parent 60 23.5 2.130e+01 -2.203305 1.5159 -1.453435
-#> ds 4 parent 90 11.8 1.180e+01 0.002834 1.0032 0.002825
-#> ds 4 parent 90 12.1 1.180e+01 -0.297166 1.0032 -0.296226
-#> ds 4 parent 120 7.0 6.868e+00 -0.132251 0.7922 -0.166937
-#> ds 4 parent 120 6.2 6.868e+00 0.667749 0.7922 0.842879
-#> ds 4 m1 0 1.6 0.000e+00 -1.600000 0.6586 -2.429424
-#> ds 4 m1 1 0.9 6.826e-01 -0.217363 0.6600 -0.329315
-#> ds 4 m1 3 3.7 1.935e+00 -1.765082 0.6702 -2.633768
-#> ds 4 m1 3 2.0 1.935e+00 -0.065082 0.6702 -0.097112
-#> ds 4 m1 7 3.6 4.035e+00 0.434805 0.7076 0.614501
-#> ds 4 m1 7 3.8 4.035e+00 0.234805 0.7076 0.331845
-#> ds 4 m1 14 7.1 6.652e+00 -0.448187 0.7846 -0.571220
-#> ds 4 m1 14 6.6 6.652e+00 0.051813 0.7846 0.066036
-#> ds 4 m1 28 9.5 9.156e+00 -0.343805 0.8822 -0.389696
-#> ds 4 m1 28 9.3 9.156e+00 -0.143805 0.8822 -0.163000
-#> ds 4 m1 60 8.3 8.848e+00 0.547762 0.8692 0.630185
-#> ds 4 m1 60 9.0 8.848e+00 -0.152238 0.8692 -0.175146
-#> ds 4 m1 90 6.6 6.674e+00 0.073979 0.7854 0.094194
-#> ds 4 m1 90 7.7 6.674e+00 -1.026021 0.7854 -1.306390
-#> ds 4 m1 120 3.7 4.668e+00 0.967537 0.7234 1.337503
-#> ds 4 m1 120 3.5 4.668e+00 1.167537 0.7234 1.613979
-#> ds 5 parent 0 110.4 1.022e+02 -8.170986 6.5872 -1.240433
-#> ds 5 parent 0 112.1 1.022e+02 -9.870986 6.5872 -1.498509
-#> ds 5 parent 1 93.5 9.513e+01 1.630764 6.1346 0.265832
-#> ds 5 parent 1 91.0 9.513e+01 4.130764 6.1346 0.673359
-#> ds 5 parent 3 71.0 8.296e+01 11.964279 5.3597 2.232268
-#> ds 5 parent 3 89.7 8.296e+01 -6.735721 5.3597 -1.256735
-#> ds 5 parent 7 60.4 6.495e+01 4.547441 4.2157 1.078684
-#> ds 5 parent 7 59.1 6.495e+01 5.847441 4.2157 1.387053
-#> ds 5 parent 14 56.5 4.626e+01 -10.241319 3.0380 -3.371047
-#> ds 5 parent 14 47.0 4.626e+01 -0.741319 3.0380 -0.244014
-#> ds 5 parent 28 30.2 3.026e+01 0.058478 2.0487 0.028544
-#> ds 5 parent 28 23.9 3.026e+01 6.358478 2.0487 3.103661
-#> ds 5 parent 60 17.0 1.792e+01 0.919046 1.3242 0.694024
-#> ds 5 parent 60 18.7 1.792e+01 -0.780954 1.3242 -0.589742
-#> ds 5 parent 90 11.3 1.187e+01 0.573917 1.0066 0.570144
-#> ds 5 parent 90 11.9 1.187e+01 -0.026083 1.0066 -0.025912
-#> ds 5 parent 120 9.0 7.898e+00 -1.102089 0.8307 -1.326622
-#> ds 5 parent 120 8.1 7.898e+00 -0.202089 0.8307 -0.243261
-#> ds 5 m1 0 0.7 -1.421e-14 -0.700000 0.6586 -1.062873
-#> ds 5 m1 1 3.0 3.144e+00 0.143526 0.6887 0.208390
-#> ds 5 m1 1 2.6 3.144e+00 0.543526 0.6887 0.789161
-#> ds 5 m1 3 5.1 8.390e+00 3.290265 0.8504 3.869277
-#> ds 5 m1 3 7.5 8.390e+00 0.890265 0.8504 1.046932
-#> ds 5 m1 7 16.5 1.566e+01 -0.841368 1.2007 -0.700751
-#> ds 5 m1 7 19.0 1.566e+01 -3.341368 1.2007 -2.782928
-#> ds 5 m1 14 22.9 2.188e+01 -1.017753 1.5498 -0.656687
-#> ds 5 m1 14 23.2 2.188e+01 -1.317753 1.5498 -0.850257
-#> ds 5 m1 28 22.2 2.386e+01 1.655914 1.6652 0.994399
-#> ds 5 m1 28 24.4 2.386e+01 -0.544086 1.6652 -0.326731
-#> ds 5 m1 60 15.5 1.859e+01 3.091124 1.3618 2.269915
-#> ds 5 m1 60 19.8 1.859e+01 -1.208876 1.3618 -0.887718
-#> ds 5 m1 90 14.9 1.372e+01 -1.176815 1.0990 -1.070784
-#> ds 5 m1 90 14.2 1.372e+01 -0.476815 1.0990 -0.433854
-#> ds 5 m1 120 10.9 9.961e+00 -0.938796 0.9174 -1.023332
-#> ds 5 m1 120 10.4 9.961e+00 -0.438796 0.9174 -0.478308</div><div class='input'><span class='co'># }</span>
+#> ds name time observed predicted residual std standardized
+#> ds 1 parent 0 89.8 9.878e+01 8.98039 6.3899 1.40541
+#> ds 1 parent 0 104.1 9.878e+01 -5.31961 6.3899 -0.83251
+#> ds 1 parent 1 88.7 9.422e+01 5.52084 6.0981 0.90533
+#> ds 1 parent 1 95.5 9.422e+01 -1.27916 6.0981 -0.20976
+#> ds 1 parent 3 81.8 8.587e+01 4.06752 5.5641 0.73103
+#> ds 1 parent 3 94.5 8.587e+01 -8.63248 5.5641 -1.55147
+#> ds 1 parent 7 71.5 7.180e+01 0.29615 4.6662 0.06347
+#> ds 1 parent 7 70.3 7.180e+01 1.49615 4.6662 0.32063
+#> ds 1 parent 14 54.2 5.360e+01 -0.59602 3.5112 -0.16975
+#> ds 1 parent 14 49.6 5.360e+01 4.00398 3.5112 1.14035
+#> ds 1 parent 28 31.5 3.213e+01 0.62529 2.1691 0.28828
+#> ds 1 parent 28 28.8 3.213e+01 3.32529 2.1691 1.53306
+#> ds 1 parent 60 12.1 1.271e+01 0.60718 1.0490 0.57879
+#> ds 1 parent 60 13.6 1.271e+01 -0.89282 1.0490 -0.85108
+#> ds 1 parent 90 6.2 6.080e+00 -0.12020 0.7649 -0.15716
+#> ds 1 parent 90 8.3 6.080e+00 -2.22020 0.7649 -2.90279
+#> ds 1 parent 120 2.2 3.011e+00 0.81059 0.6852 1.18302
+#> ds 1 parent 120 2.4 3.011e+00 0.61059 0.6852 0.89113
+#> ds 1 m1 1 0.3 1.131e+00 0.83071 0.6613 1.25628
+#> ds 1 m1 1 0.2 1.131e+00 0.93071 0.6613 1.40750
+#> ds 1 m1 3 2.2 3.147e+00 0.94691 0.6877 1.37688
+#> ds 1 m1 3 3.0 3.147e+00 0.14691 0.6877 0.21361
+#> ds 1 m1 7 6.5 6.341e+00 -0.15949 0.7736 -0.20618
+#> ds 1 m1 7 5.0 6.341e+00 1.34051 0.7736 1.73290
+#> ds 1 m1 14 10.2 9.910e+00 -0.28991 0.9157 -0.31659
+#> ds 1 m1 14 9.5 9.910e+00 0.41009 0.9157 0.44783
+#> ds 1 m1 28 12.2 1.255e+01 0.34690 1.0410 0.33323
+#> ds 1 m1 28 13.4 1.255e+01 -0.85310 1.0410 -0.81949
+#> ds 1 m1 60 11.8 1.087e+01 -0.92713 0.9599 -0.96586
+#> ds 1 m1 60 13.2 1.087e+01 -2.32713 0.9599 -2.42434
+#> ds 1 m1 90 6.6 7.813e+00 1.21254 0.8274 1.46541
+#> ds 1 m1 90 9.3 7.813e+00 -1.48746 0.8274 -1.79766
+#> ds 1 m1 120 3.5 5.295e+00 1.79489 0.7403 2.42457
+#> ds 1 m1 120 5.4 5.295e+00 -0.10511 0.7403 -0.14198
+#> ds 2 parent 0 118.0 1.074e+02 -10.63436 6.9396 -1.53242
+#> ds 2 parent 0 99.8 1.074e+02 7.56564 6.9396 1.09021
+#> ds 2 parent 1 90.2 1.012e+02 10.96486 6.5425 1.67594
+#> ds 2 parent 1 94.6 1.012e+02 6.56486 6.5425 1.00342
+#> ds 2 parent 3 96.1 9.054e+01 -5.56014 5.8627 -0.94839
+#> ds 2 parent 3 78.4 9.054e+01 12.13986 5.8627 2.07069
+#> ds 2 parent 7 77.9 7.468e+01 -3.21805 4.8501 -0.66350
+#> ds 2 parent 7 77.7 7.468e+01 -3.01805 4.8501 -0.62226
+#> ds 2 parent 14 56.0 5.748e+01 1.47774 3.7563 0.39340
+#> ds 2 parent 14 54.7 5.748e+01 2.77774 3.7563 0.73948
+#> ds 2 parent 28 36.6 3.996e+01 3.36317 2.6541 1.26717
+#> ds 2 parent 28 36.8 3.996e+01 3.16317 2.6541 1.19182
+#> ds 2 parent 60 22.1 2.132e+01 -0.78225 1.5210 -0.51430
+#> ds 2 parent 60 24.7 2.132e+01 -3.38225 1.5210 -2.22369
+#> ds 2 parent 90 12.4 1.215e+01 -0.25010 1.0213 -0.24487
+#> ds 2 parent 90 10.8 1.215e+01 1.34990 1.0213 1.32169
+#> ds 2 parent 120 6.8 6.931e+00 0.13105 0.7943 0.16500
+#> ds 2 parent 120 7.9 6.931e+00 -0.96895 0.7943 -1.21994
+#> ds 2 m1 1 1.3 1.519e+00 0.21924 0.6645 0.32995
+#> ds 2 m1 3 3.7 4.049e+00 0.34891 0.7070 0.49351
+#> ds 2 m1 3 4.7 4.049e+00 -0.65109 0.7070 -0.92094
+#> ds 2 m1 7 8.1 7.565e+00 -0.53526 0.8179 -0.65448
+#> ds 2 m1 7 7.9 7.565e+00 -0.33526 0.8179 -0.40993
+#> ds 2 m1 14 10.1 1.071e+01 0.60614 0.9521 0.63663
+#> ds 2 m1 14 10.3 1.071e+01 0.40614 0.9521 0.42657
+#> ds 2 m1 28 10.7 1.224e+01 1.54440 1.0260 1.50526
+#> ds 2 m1 28 12.2 1.224e+01 0.04440 1.0260 0.04327
+#> ds 2 m1 60 10.7 1.056e+01 -0.14005 0.9453 -0.14815
+#> ds 2 m1 60 12.5 1.056e+01 -1.94005 0.9453 -2.05226
+#> ds 2 m1 90 9.1 8.089e+00 -1.01088 0.8384 -1.20577
+#> ds 2 m1 90 7.4 8.089e+00 0.68912 0.8384 0.82197
+#> ds 2 m1 120 6.1 5.855e+00 -0.24463 0.7576 -0.32292
+#> ds 2 m1 120 4.5 5.855e+00 1.35537 0.7576 1.78911
+#> ds 3 parent 0 106.2 1.095e+02 3.30335 7.0765 0.46680
+#> ds 3 parent 0 106.9 1.095e+02 2.60335 7.0765 0.36788
+#> ds 3 parent 1 107.4 9.939e+01 -8.01282 6.4287 -1.24641
+#> ds 3 parent 1 96.1 9.939e+01 3.28718 6.4287 0.51133
+#> ds 3 parent 3 79.4 8.365e+01 4.24698 5.4222 0.78326
+#> ds 3 parent 3 82.6 8.365e+01 1.04698 5.4222 0.19309
+#> ds 3 parent 7 63.9 6.405e+01 0.14704 4.1732 0.03523
+#> ds 3 parent 7 62.4 6.405e+01 1.64704 4.1732 0.39467
+#> ds 3 parent 14 51.0 4.795e+01 -3.04985 3.1546 -0.96681
+#> ds 3 parent 14 47.1 4.795e+01 0.85015 3.1546 0.26950
+#> ds 3 parent 28 36.1 3.501e+01 -1.09227 2.3465 -0.46549
+#> ds 3 parent 28 36.6 3.501e+01 -1.59227 2.3465 -0.67858
+#> ds 3 parent 60 20.1 2.012e+01 0.02116 1.4520 0.01457
+#> ds 3 parent 60 19.8 2.012e+01 0.32116 1.4520 0.22119
+#> ds 3 parent 90 11.3 1.206e+01 0.76096 1.0170 0.74826
+#> ds 3 parent 90 10.7 1.206e+01 1.36096 1.0170 1.33825
+#> ds 3 parent 120 8.2 7.230e+00 -0.97022 0.8052 -1.20493
+#> ds 3 parent 120 7.3 7.230e+00 -0.07022 0.8052 -0.08721
+#> ds 3 m1 0 0.8 -5.684e-13 -0.80000 0.6572 -1.21722
+#> ds 3 m1 1 1.8 2.045e+00 0.24538 0.6703 0.36608
+#> ds 3 m1 1 2.3 2.045e+00 -0.25462 0.6703 -0.37987
+#> ds 3 m1 3 4.2 5.136e+00 0.93594 0.7356 1.27228
+#> ds 3 m1 3 4.1 5.136e+00 1.03594 0.7356 1.40822
+#> ds 3 m1 7 6.8 8.674e+00 1.87438 0.8623 2.17381
+#> ds 3 m1 7 10.1 8.674e+00 -1.42562 0.8623 -1.65335
+#> ds 3 m1 14 11.4 1.083e+01 -0.56746 0.9580 -0.59233
+#> ds 3 m1 14 12.8 1.083e+01 -1.96746 0.9580 -2.05369
+#> ds 3 m1 28 11.5 1.098e+01 -0.51762 0.9651 -0.53637
+#> ds 3 m1 28 10.6 1.098e+01 0.38238 0.9651 0.39623
+#> ds 3 m1 60 7.5 8.889e+00 1.38911 0.8713 1.59436
+#> ds 3 m1 60 8.6 8.889e+00 0.28911 0.8713 0.33183
+#> ds 3 m1 90 7.3 6.774e+00 -0.52608 0.7886 -0.66708
+#> ds 3 m1 90 8.1 6.774e+00 -1.32608 0.7886 -1.68150
+#> ds 3 m1 120 5.3 4.954e+00 -0.34584 0.7305 -0.47345
+#> ds 3 m1 120 3.8 4.954e+00 1.15416 0.7305 1.58004
+#> ds 4 parent 0 104.7 9.957e+01 -5.13169 6.4403 -0.79681
+#> ds 4 parent 0 88.3 9.957e+01 11.26831 6.4403 1.74966
+#> ds 4 parent 1 94.2 9.644e+01 2.23888 6.2400 0.35879
+#> ds 4 parent 1 94.6 9.644e+01 1.83888 6.2400 0.29469
+#> ds 4 parent 3 78.1 9.054e+01 12.43946 5.8627 2.12180
+#> ds 4 parent 3 96.5 9.054e+01 -5.96054 5.8627 -1.01669
+#> ds 4 parent 7 76.2 8.004e+01 3.83771 5.1918 0.73919
+#> ds 4 parent 7 77.8 8.004e+01 2.23771 5.1918 0.43101
+#> ds 4 parent 14 70.8 6.511e+01 -5.69246 4.2406 -1.34238
+#> ds 4 parent 14 67.3 6.511e+01 -2.19246 4.2406 -0.51702
+#> ds 4 parent 28 43.1 4.454e+01 1.43744 2.9401 0.48890
+#> ds 4 parent 28 45.1 4.454e+01 -0.56256 2.9401 -0.19134
+#> ds 4 parent 60 21.3 2.132e+01 0.02005 1.5211 0.01318
+#> ds 4 parent 60 23.5 2.132e+01 -2.17995 1.5211 -1.43310
+#> ds 4 parent 90 11.8 1.182e+01 0.02167 1.0053 0.02156
+#> ds 4 parent 90 12.1 1.182e+01 -0.27833 1.0053 -0.27687
+#> ds 4 parent 120 7.0 6.852e+00 -0.14780 0.7914 -0.18675
+#> ds 4 parent 120 6.2 6.852e+00 0.65220 0.7914 0.82408
+#> ds 4 m1 0 1.6 -5.684e-14 -1.60000 0.6572 -2.43444
+#> ds 4 m1 1 0.9 6.918e-01 -0.20821 0.6587 -0.31607
+#> ds 4 m1 3 3.7 1.959e+00 -1.74131 0.6692 -2.60204
+#> ds 4 m1 3 2.0 1.959e+00 -0.04131 0.6692 -0.06173
+#> ds 4 m1 7 3.6 4.076e+00 0.47590 0.7076 0.67252
+#> ds 4 m1 7 3.8 4.076e+00 0.27590 0.7076 0.38989
+#> ds 4 m1 14 7.1 6.698e+00 -0.40189 0.7859 -0.51135
+#> ds 4 m1 14 6.6 6.698e+00 0.09811 0.7859 0.12483
+#> ds 4 m1 28 9.5 9.175e+00 -0.32492 0.8835 -0.36779
+#> ds 4 m1 28 9.3 9.175e+00 -0.12492 0.8835 -0.14141
+#> ds 4 m1 60 8.3 8.818e+00 0.51810 0.8683 0.59671
+#> ds 4 m1 60 9.0 8.818e+00 -0.18190 0.8683 -0.20949
+#> ds 4 m1 90 6.6 6.645e+00 0.04480 0.7841 0.05713
+#> ds 4 m1 90 7.7 6.645e+00 -1.05520 0.7841 -1.34581
+#> ds 4 m1 120 3.7 4.648e+00 0.94805 0.7221 1.31293
+#> ds 4 m1 120 3.5 4.648e+00 1.14805 0.7221 1.58991
+#> ds 5 parent 0 110.4 1.026e+02 -7.81752 6.6333 -1.17853
+#> ds 5 parent 0 112.1 1.026e+02 -9.51752 6.6333 -1.43482
+#> ds 5 parent 1 93.5 9.560e+01 2.10274 6.1865 0.33989
+#> ds 5 parent 1 91.0 9.560e+01 4.60274 6.1865 0.74399
+#> ds 5 parent 3 71.0 8.356e+01 12.55799 5.4165 2.31846
+#> ds 5 parent 3 89.7 8.356e+01 -6.14201 5.4165 -1.13394
+#> ds 5 parent 7 60.4 6.550e+01 5.09732 4.2653 1.19506
+#> ds 5 parent 7 59.1 6.550e+01 6.39732 4.2653 1.49984
+#> ds 5 parent 14 56.5 4.641e+01 -10.09145 3.0576 -3.30044
+#> ds 5 parent 14 47.0 4.641e+01 -0.59145 3.0576 -0.19344
+#> ds 5 parent 28 30.2 2.982e+01 -0.37647 2.0284 -0.18560
+#> ds 5 parent 28 23.9 2.982e+01 5.92353 2.0284 2.92028
+#> ds 5 parent 60 17.0 1.754e+01 0.53981 1.3060 0.41332
+#> ds 5 parent 60 18.7 1.754e+01 -1.16019 1.3060 -0.88834
+#> ds 5 parent 90 11.3 1.175e+01 0.45050 1.0018 0.44969
+#> ds 5 parent 90 11.9 1.175e+01 -0.14950 1.0018 -0.14923
+#> ds 5 parent 120 9.0 7.915e+00 -1.08476 0.8315 -1.30462
+#> ds 5 parent 120 8.1 7.915e+00 -0.18476 0.8315 -0.22220
+#> ds 5 m1 0 0.7 0.000e+00 -0.70000 0.6572 -1.06507
+#> ds 5 m1 1 3.0 3.062e+00 0.06170 0.6861 0.08992
+#> ds 5 m1 1 2.6 3.062e+00 0.46170 0.6861 0.67290
+#> ds 5 m1 3 5.1 8.209e+00 3.10938 0.8432 3.68760
+#> ds 5 m1 3 7.5 8.209e+00 0.70938 0.8432 0.84130
+#> ds 5 m1 7 16.5 1.544e+01 -1.05567 1.1914 -0.88605
+#> ds 5 m1 7 19.0 1.544e+01 -3.55567 1.1914 -2.98436
+#> ds 5 m1 14 22.9 2.181e+01 -1.08765 1.5498 -0.70181
+#> ds 5 m1 14 23.2 2.181e+01 -1.38765 1.5498 -0.89539
+#> ds 5 m1 28 22.2 2.404e+01 1.83624 1.6805 1.09270
+#> ds 5 m1 28 24.4 2.404e+01 -0.36376 1.6805 -0.21647
+#> ds 5 m1 60 15.5 1.875e+01 3.25390 1.3741 2.36805
+#> ds 5 m1 60 19.8 1.875e+01 -1.04610 1.3741 -0.76131
+#> ds 5 m1 90 14.9 1.380e+01 -1.09507 1.1050 -0.99102
+#> ds 5 m1 90 14.2 1.380e+01 -0.39507 1.1050 -0.35753
+#> ds 5 m1 120 10.9 1.002e+01 -0.88429 0.9205 -0.96069
+#> ds 5 m1 120 10.4 1.002e+01 -0.38429 0.9205 -0.41749</div><div class='input'><span class='co'># }</span>
</div></pre>
</div>
--
cgit v1.2.1
From 3dde3b95f1db925c89cd04d19f95c6fc9f68f473 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Sat, 13 Feb 2021 12:40:44 +0100
Subject: Update docs
---
docs/dev/reference/summary.saem.mmkin.html | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index 93e1365d..81054813 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -76,7 +76,7 @@ endpoints such as formation fractions and DT50 values. Optionally
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.1.9000</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.2.9000</span>
</span>
</div>
@@ -260,15 +260,15 @@ saemix authors for the parts inherited from saemix.</p>
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Sat Feb 6 18:30:00 2021"
+#> [1] "Sat Feb 13 12:33:52 2021"
#> ....
#> Minimisation finished
-#> [1] "Sat Feb 6 18:30:11 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+#> [1] "Sat Feb 13 12:34:03 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
-#> mkin version used for pre-fitting: 1.0.1.9000
+#> mkin version used for pre-fitting: 1.0.2.9000
#> R version used for fitting: 4.0.3
-#> Date of fit: Sat Feb 6 18:30:12 2021
-#> Date of summary: Sat Feb 6 18:30:12 2021
+#> Date of fit: Sat Feb 13 12:34:04 2021
+#> Date of summary: Sat Feb 13 12:34:04 2021
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -283,7 +283,7 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 11.769 s using 300, 100 iterations
+#> Fitted in 11.899 s using 300, 100 iterations
#>
#> Variance model: Two-component variance function
#>
--
cgit v1.2.1
From b9be19af5e3085216d0cd5af439332f631fa8b92 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Mon, 15 Feb 2021 17:36:12 +0100
Subject: Fully rebuild docs, rerun tests and check
---
docs/dev/reference/summary.saem.mmkin.html | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index 81054813..0d661ee9 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -76,7 +76,7 @@ endpoints such as formation fractions and DT50 values. Optionally
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.2.9000</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span>
</span>
</div>
@@ -260,15 +260,15 @@ saemix authors for the parts inherited from saemix.</p>
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Sat Feb 13 12:33:52 2021"
+#> [1] "Mon Feb 15 17:13:15 2021"
#> ....
#> Minimisation finished
-#> [1] "Sat Feb 13 12:34:03 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+#> [1] "Mon Feb 15 17:13:26 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
-#> mkin version used for pre-fitting: 1.0.2.9000
+#> mkin version used for pre-fitting: 1.0.3.9000
#> R version used for fitting: 4.0.3
-#> Date of fit: Sat Feb 13 12:34:04 2021
-#> Date of summary: Sat Feb 13 12:34:04 2021
+#> Date of fit: Mon Feb 15 17:13:27 2021
+#> Date of summary: Mon Feb 15 17:13:27 2021
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -283,7 +283,7 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 11.899 s using 300, 100 iterations
+#> Fitted in 12.204 s using 300, 100 iterations
#>
#> Variance model: Two-component variance function
#>
--
cgit v1.2.1
From c73b2f30ec836c949885784ab576e814eb8070a9 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 9 Mar 2021 17:35:47 +0100
Subject: Some improvements for borderline cases
- fit_with_errors for saem()
- test_log_parms for mean_degparms() and saem()
---
docs/dev/reference/summary.saem.mmkin.html | 422 ++++++++++++++---------------
1 file changed, 211 insertions(+), 211 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index 0d661ee9..1166abb1 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -76,7 +76,7 @@ endpoints such as formation fractions and DT50 values. Optionally
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.3.9000</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.4.9000</span>
</span>
</div>
@@ -260,15 +260,15 @@ saemix authors for the parts inherited from saemix.</p>
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Mon Feb 15 17:13:15 2021"
+#> [1] "Tue Mar 9 17:35:19 2021"
#> ....
#> Minimisation finished
-#> [1] "Mon Feb 15 17:13:26 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+#> [1] "Tue Mar 9 17:35:30 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
-#> mkin version used for pre-fitting: 1.0.3.9000
-#> R version used for fitting: 4.0.3
-#> Date of fit: Mon Feb 15 17:13:27 2021
-#> Date of summary: Mon Feb 15 17:13:27 2021
+#> mkin version used for pre-fitting: 1.0.4.9000
+#> R version used for fitting: 4.0.4
+#> Date of fit: Tue Mar 9 17:35:31 2021
+#> Date of summary: Tue Mar 9 17:35:31 2021
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -283,7 +283,7 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 12.204 s using 300, 100 iterations
+#> Fitted in 12.058 s using 300, 100 iterations
#>
#> Variance model: Two-component variance function
#>
@@ -300,231 +300,231 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Likelihood computed by importance sampling
#> AIC BIC logLik
-#> 829.3 823.9 -400.7
+#> 825.9 820.4 -398.9
#>
#> Optimised parameters:
-#> est. lower upper
-#> parent_0 101.29457 97.855 104.7344
-#> log_k_m1 -4.06337 -4.182 -3.9445
-#> f_parent_qlogis -0.94546 -1.307 -0.5841
-#> log_k1 -2.98794 -3.844 -2.1321
-#> log_k2 -3.47891 -4.253 -2.7050
-#> g_qlogis -0.03211 -1.157 1.0931
+#> est. lower upper
+#> parent_0 101.118986 97.368 104.8695
+#> log_k_m1 -4.057591 -4.177 -3.9379
+#> f_parent_qlogis -0.933087 -1.290 -0.5763
+#> log_k1 -2.945520 -3.833 -2.0576
+#> log_k2 -3.531954 -4.310 -2.7542
+#> g_qlogis -0.009584 -1.688 1.6687
#>
#> Correlation:
#> prnt_0 lg_k_1 f_prn_ log_k1 log_k2
-#> log_k_m1 -0.202
-#> f_parent_qlogis -0.145 0.195
-#> log_k1 0.094 -0.099 -0.049
-#> log_k2 -0.042 0.056 0.024 -0.097
-#> g_qlogis -0.005 0.000 0.007 -0.160 -0.113
+#> log_k_m1 -0.198
+#> f_parent_qlogis -0.153 0.184
+#> log_k1 0.080 -0.077 -0.045
+#> log_k2 0.005 0.008 -0.003 -0.019
+#> g_qlogis -0.059 0.048 0.041 -0.334 -0.253
#>
#> Random effects:
#> est. lower upper
-#> SD.parent_0 2.70085 -0.64980 6.0515
-#> SD.log_k_m1 0.08408 -0.04023 0.2084
-#> SD.f_parent_qlogis 0.39215 0.13695 0.6473
-#> SD.log_k1 0.89280 0.27466 1.5109
-#> SD.log_k2 0.82387 0.26388 1.3838
-#> SD.g_qlogis 0.36468 -0.86978 1.5991
+#> SD.parent_0 2.97797 -0.62927 6.5852
+#> SD.log_k_m1 0.09235 -0.02448 0.2092
+#> SD.f_parent_qlogis 0.38712 0.13469 0.6396
+#> SD.log_k1 0.88671 0.27052 1.5029
+#> SD.log_k2 0.80497 0.25587 1.3541
+#> SD.g_qlogis 0.36812 -3.56188 4.2981
#>
#> Variance model:
#> est. lower upper
-#> a.1 0.65724 0.49361 0.82086
-#> b.1 0.06434 0.05034 0.07835
+#> a.1 0.85879 0.68143 1.03615
+#> b.1 0.07787 0.06288 0.09286
#>
#> Backtransformed parameters:
#> est. lower upper
-#> parent_0 101.29457 97.85477 104.73437
-#> k_m1 0.01719 0.01526 0.01936
-#> f_parent_to_m1 0.27980 0.21302 0.35798
-#> k1 0.05039 0.02141 0.11859
-#> k2 0.03084 0.01422 0.06687
-#> g 0.49197 0.23916 0.74896
+#> parent_0 101.11899 97.36850 104.86947
+#> k_m1 0.01729 0.01534 0.01949
+#> f_parent_to_m1 0.28230 0.21587 0.35979
+#> k1 0.05257 0.02163 0.12776
+#> k2 0.02925 0.01344 0.06366
+#> g 0.49760 0.15606 0.84140
#>
#> Resulting formation fractions:
#> ff
-#> parent_m1 0.2798
-#> parent_sink 0.7202
+#> parent_m1 0.2823
+#> parent_sink 0.7177
#>
#> Estimated disappearance times:
#> DT50 DT90 DT50back DT50_k1 DT50_k2
-#> parent 17.49 61.05 18.38 13.76 22.47
-#> m1 40.32 133.94 NA NA NA
+#> parent 17.47 62.31 18.76 13.18 23.7
+#> m1 40.09 133.17 NA NA NA
#>
#> Data:
-#> ds name time observed predicted residual std standardized
-#> ds 1 parent 0 89.8 9.878e+01 8.98039 6.3899 1.40541
-#> ds 1 parent 0 104.1 9.878e+01 -5.31961 6.3899 -0.83251
-#> ds 1 parent 1 88.7 9.422e+01 5.52084 6.0981 0.90533
-#> ds 1 parent 1 95.5 9.422e+01 -1.27916 6.0981 -0.20976
-#> ds 1 parent 3 81.8 8.587e+01 4.06752 5.5641 0.73103
-#> ds 1 parent 3 94.5 8.587e+01 -8.63248 5.5641 -1.55147
-#> ds 1 parent 7 71.5 7.180e+01 0.29615 4.6662 0.06347
-#> ds 1 parent 7 70.3 7.180e+01 1.49615 4.6662 0.32063
-#> ds 1 parent 14 54.2 5.360e+01 -0.59602 3.5112 -0.16975
-#> ds 1 parent 14 49.6 5.360e+01 4.00398 3.5112 1.14035
-#> ds 1 parent 28 31.5 3.213e+01 0.62529 2.1691 0.28828
-#> ds 1 parent 28 28.8 3.213e+01 3.32529 2.1691 1.53306
-#> ds 1 parent 60 12.1 1.271e+01 0.60718 1.0490 0.57879
-#> ds 1 parent 60 13.6 1.271e+01 -0.89282 1.0490 -0.85108
-#> ds 1 parent 90 6.2 6.080e+00 -0.12020 0.7649 -0.15716
-#> ds 1 parent 90 8.3 6.080e+00 -2.22020 0.7649 -2.90279
-#> ds 1 parent 120 2.2 3.011e+00 0.81059 0.6852 1.18302
-#> ds 1 parent 120 2.4 3.011e+00 0.61059 0.6852 0.89113
-#> ds 1 m1 1 0.3 1.131e+00 0.83071 0.6613 1.25628
-#> ds 1 m1 1 0.2 1.131e+00 0.93071 0.6613 1.40750
-#> ds 1 m1 3 2.2 3.147e+00 0.94691 0.6877 1.37688
-#> ds 1 m1 3 3.0 3.147e+00 0.14691 0.6877 0.21361
-#> ds 1 m1 7 6.5 6.341e+00 -0.15949 0.7736 -0.20618
-#> ds 1 m1 7 5.0 6.341e+00 1.34051 0.7736 1.73290
-#> ds 1 m1 14 10.2 9.910e+00 -0.28991 0.9157 -0.31659
-#> ds 1 m1 14 9.5 9.910e+00 0.41009 0.9157 0.44783
-#> ds 1 m1 28 12.2 1.255e+01 0.34690 1.0410 0.33323
-#> ds 1 m1 28 13.4 1.255e+01 -0.85310 1.0410 -0.81949
-#> ds 1 m1 60 11.8 1.087e+01 -0.92713 0.9599 -0.96586
-#> ds 1 m1 60 13.2 1.087e+01 -2.32713 0.9599 -2.42434
-#> ds 1 m1 90 6.6 7.813e+00 1.21254 0.8274 1.46541
-#> ds 1 m1 90 9.3 7.813e+00 -1.48746 0.8274 -1.79766
-#> ds 1 m1 120 3.5 5.295e+00 1.79489 0.7403 2.42457
-#> ds 1 m1 120 5.4 5.295e+00 -0.10511 0.7403 -0.14198
-#> ds 2 parent 0 118.0 1.074e+02 -10.63436 6.9396 -1.53242
-#> ds 2 parent 0 99.8 1.074e+02 7.56564 6.9396 1.09021
-#> ds 2 parent 1 90.2 1.012e+02 10.96486 6.5425 1.67594
-#> ds 2 parent 1 94.6 1.012e+02 6.56486 6.5425 1.00342
-#> ds 2 parent 3 96.1 9.054e+01 -5.56014 5.8627 -0.94839
-#> ds 2 parent 3 78.4 9.054e+01 12.13986 5.8627 2.07069
-#> ds 2 parent 7 77.9 7.468e+01 -3.21805 4.8501 -0.66350
-#> ds 2 parent 7 77.7 7.468e+01 -3.01805 4.8501 -0.62226
-#> ds 2 parent 14 56.0 5.748e+01 1.47774 3.7563 0.39340
-#> ds 2 parent 14 54.7 5.748e+01 2.77774 3.7563 0.73948
-#> ds 2 parent 28 36.6 3.996e+01 3.36317 2.6541 1.26717
-#> ds 2 parent 28 36.8 3.996e+01 3.16317 2.6541 1.19182
-#> ds 2 parent 60 22.1 2.132e+01 -0.78225 1.5210 -0.51430
-#> ds 2 parent 60 24.7 2.132e+01 -3.38225 1.5210 -2.22369
-#> ds 2 parent 90 12.4 1.215e+01 -0.25010 1.0213 -0.24487
-#> ds 2 parent 90 10.8 1.215e+01 1.34990 1.0213 1.32169
-#> ds 2 parent 120 6.8 6.931e+00 0.13105 0.7943 0.16500
-#> ds 2 parent 120 7.9 6.931e+00 -0.96895 0.7943 -1.21994
-#> ds 2 m1 1 1.3 1.519e+00 0.21924 0.6645 0.32995
-#> ds 2 m1 3 3.7 4.049e+00 0.34891 0.7070 0.49351
-#> ds 2 m1 3 4.7 4.049e+00 -0.65109 0.7070 -0.92094
-#> ds 2 m1 7 8.1 7.565e+00 -0.53526 0.8179 -0.65448
-#> ds 2 m1 7 7.9 7.565e+00 -0.33526 0.8179 -0.40993
-#> ds 2 m1 14 10.1 1.071e+01 0.60614 0.9521 0.63663
-#> ds 2 m1 14 10.3 1.071e+01 0.40614 0.9521 0.42657
-#> ds 2 m1 28 10.7 1.224e+01 1.54440 1.0260 1.50526
-#> ds 2 m1 28 12.2 1.224e+01 0.04440 1.0260 0.04327
-#> ds 2 m1 60 10.7 1.056e+01 -0.14005 0.9453 -0.14815
-#> ds 2 m1 60 12.5 1.056e+01 -1.94005 0.9453 -2.05226
-#> ds 2 m1 90 9.1 8.089e+00 -1.01088 0.8384 -1.20577
-#> ds 2 m1 90 7.4 8.089e+00 0.68912 0.8384 0.82197
-#> ds 2 m1 120 6.1 5.855e+00 -0.24463 0.7576 -0.32292
-#> ds 2 m1 120 4.5 5.855e+00 1.35537 0.7576 1.78911
-#> ds 3 parent 0 106.2 1.095e+02 3.30335 7.0765 0.46680
-#> ds 3 parent 0 106.9 1.095e+02 2.60335 7.0765 0.36788
-#> ds 3 parent 1 107.4 9.939e+01 -8.01282 6.4287 -1.24641
-#> ds 3 parent 1 96.1 9.939e+01 3.28718 6.4287 0.51133
-#> ds 3 parent 3 79.4 8.365e+01 4.24698 5.4222 0.78326
-#> ds 3 parent 3 82.6 8.365e+01 1.04698 5.4222 0.19309
-#> ds 3 parent 7 63.9 6.405e+01 0.14704 4.1732 0.03523
-#> ds 3 parent 7 62.4 6.405e+01 1.64704 4.1732 0.39467
-#> ds 3 parent 14 51.0 4.795e+01 -3.04985 3.1546 -0.96681
-#> ds 3 parent 14 47.1 4.795e+01 0.85015 3.1546 0.26950
-#> ds 3 parent 28 36.1 3.501e+01 -1.09227 2.3465 -0.46549
-#> ds 3 parent 28 36.6 3.501e+01 -1.59227 2.3465 -0.67858
-#> ds 3 parent 60 20.1 2.012e+01 0.02116 1.4520 0.01457
-#> ds 3 parent 60 19.8 2.012e+01 0.32116 1.4520 0.22119
-#> ds 3 parent 90 11.3 1.206e+01 0.76096 1.0170 0.74826
-#> ds 3 parent 90 10.7 1.206e+01 1.36096 1.0170 1.33825
-#> ds 3 parent 120 8.2 7.230e+00 -0.97022 0.8052 -1.20493
-#> ds 3 parent 120 7.3 7.230e+00 -0.07022 0.8052 -0.08721
-#> ds 3 m1 0 0.8 -5.684e-13 -0.80000 0.6572 -1.21722
-#> ds 3 m1 1 1.8 2.045e+00 0.24538 0.6703 0.36608
-#> ds 3 m1 1 2.3 2.045e+00 -0.25462 0.6703 -0.37987
-#> ds 3 m1 3 4.2 5.136e+00 0.93594 0.7356 1.27228
-#> ds 3 m1 3 4.1 5.136e+00 1.03594 0.7356 1.40822
-#> ds 3 m1 7 6.8 8.674e+00 1.87438 0.8623 2.17381
-#> ds 3 m1 7 10.1 8.674e+00 -1.42562 0.8623 -1.65335
-#> ds 3 m1 14 11.4 1.083e+01 -0.56746 0.9580 -0.59233
-#> ds 3 m1 14 12.8 1.083e+01 -1.96746 0.9580 -2.05369
-#> ds 3 m1 28 11.5 1.098e+01 -0.51762 0.9651 -0.53637
-#> ds 3 m1 28 10.6 1.098e+01 0.38238 0.9651 0.39623
-#> ds 3 m1 60 7.5 8.889e+00 1.38911 0.8713 1.59436
-#> ds 3 m1 60 8.6 8.889e+00 0.28911 0.8713 0.33183
-#> ds 3 m1 90 7.3 6.774e+00 -0.52608 0.7886 -0.66708
-#> ds 3 m1 90 8.1 6.774e+00 -1.32608 0.7886 -1.68150
-#> ds 3 m1 120 5.3 4.954e+00 -0.34584 0.7305 -0.47345
-#> ds 3 m1 120 3.8 4.954e+00 1.15416 0.7305 1.58004
-#> ds 4 parent 0 104.7 9.957e+01 -5.13169 6.4403 -0.79681
-#> ds 4 parent 0 88.3 9.957e+01 11.26831 6.4403 1.74966
-#> ds 4 parent 1 94.2 9.644e+01 2.23888 6.2400 0.35879
-#> ds 4 parent 1 94.6 9.644e+01 1.83888 6.2400 0.29469
-#> ds 4 parent 3 78.1 9.054e+01 12.43946 5.8627 2.12180
-#> ds 4 parent 3 96.5 9.054e+01 -5.96054 5.8627 -1.01669
-#> ds 4 parent 7 76.2 8.004e+01 3.83771 5.1918 0.73919
-#> ds 4 parent 7 77.8 8.004e+01 2.23771 5.1918 0.43101
-#> ds 4 parent 14 70.8 6.511e+01 -5.69246 4.2406 -1.34238
-#> ds 4 parent 14 67.3 6.511e+01 -2.19246 4.2406 -0.51702
-#> ds 4 parent 28 43.1 4.454e+01 1.43744 2.9401 0.48890
-#> ds 4 parent 28 45.1 4.454e+01 -0.56256 2.9401 -0.19134
-#> ds 4 parent 60 21.3 2.132e+01 0.02005 1.5211 0.01318
-#> ds 4 parent 60 23.5 2.132e+01 -2.17995 1.5211 -1.43310
-#> ds 4 parent 90 11.8 1.182e+01 0.02167 1.0053 0.02156
-#> ds 4 parent 90 12.1 1.182e+01 -0.27833 1.0053 -0.27687
-#> ds 4 parent 120 7.0 6.852e+00 -0.14780 0.7914 -0.18675
-#> ds 4 parent 120 6.2 6.852e+00 0.65220 0.7914 0.82408
-#> ds 4 m1 0 1.6 -5.684e-14 -1.60000 0.6572 -2.43444
-#> ds 4 m1 1 0.9 6.918e-01 -0.20821 0.6587 -0.31607
-#> ds 4 m1 3 3.7 1.959e+00 -1.74131 0.6692 -2.60204
-#> ds 4 m1 3 2.0 1.959e+00 -0.04131 0.6692 -0.06173
-#> ds 4 m1 7 3.6 4.076e+00 0.47590 0.7076 0.67252
-#> ds 4 m1 7 3.8 4.076e+00 0.27590 0.7076 0.38989
-#> ds 4 m1 14 7.1 6.698e+00 -0.40189 0.7859 -0.51135
-#> ds 4 m1 14 6.6 6.698e+00 0.09811 0.7859 0.12483
-#> ds 4 m1 28 9.5 9.175e+00 -0.32492 0.8835 -0.36779
-#> ds 4 m1 28 9.3 9.175e+00 -0.12492 0.8835 -0.14141
-#> ds 4 m1 60 8.3 8.818e+00 0.51810 0.8683 0.59671
-#> ds 4 m1 60 9.0 8.818e+00 -0.18190 0.8683 -0.20949
-#> ds 4 m1 90 6.6 6.645e+00 0.04480 0.7841 0.05713
-#> ds 4 m1 90 7.7 6.645e+00 -1.05520 0.7841 -1.34581
-#> ds 4 m1 120 3.7 4.648e+00 0.94805 0.7221 1.31293
-#> ds 4 m1 120 3.5 4.648e+00 1.14805 0.7221 1.58991
-#> ds 5 parent 0 110.4 1.026e+02 -7.81752 6.6333 -1.17853
-#> ds 5 parent 0 112.1 1.026e+02 -9.51752 6.6333 -1.43482
-#> ds 5 parent 1 93.5 9.560e+01 2.10274 6.1865 0.33989
-#> ds 5 parent 1 91.0 9.560e+01 4.60274 6.1865 0.74399
-#> ds 5 parent 3 71.0 8.356e+01 12.55799 5.4165 2.31846
-#> ds 5 parent 3 89.7 8.356e+01 -6.14201 5.4165 -1.13394
-#> ds 5 parent 7 60.4 6.550e+01 5.09732 4.2653 1.19506
-#> ds 5 parent 7 59.1 6.550e+01 6.39732 4.2653 1.49984
-#> ds 5 parent 14 56.5 4.641e+01 -10.09145 3.0576 -3.30044
-#> ds 5 parent 14 47.0 4.641e+01 -0.59145 3.0576 -0.19344
-#> ds 5 parent 28 30.2 2.982e+01 -0.37647 2.0284 -0.18560
-#> ds 5 parent 28 23.9 2.982e+01 5.92353 2.0284 2.92028
-#> ds 5 parent 60 17.0 1.754e+01 0.53981 1.3060 0.41332
-#> ds 5 parent 60 18.7 1.754e+01 -1.16019 1.3060 -0.88834
-#> ds 5 parent 90 11.3 1.175e+01 0.45050 1.0018 0.44969
-#> ds 5 parent 90 11.9 1.175e+01 -0.14950 1.0018 -0.14923
-#> ds 5 parent 120 9.0 7.915e+00 -1.08476 0.8315 -1.30462
-#> ds 5 parent 120 8.1 7.915e+00 -0.18476 0.8315 -0.22220
-#> ds 5 m1 0 0.7 0.000e+00 -0.70000 0.6572 -1.06507
-#> ds 5 m1 1 3.0 3.062e+00 0.06170 0.6861 0.08992
-#> ds 5 m1 1 2.6 3.062e+00 0.46170 0.6861 0.67290
-#> ds 5 m1 3 5.1 8.209e+00 3.10938 0.8432 3.68760
-#> ds 5 m1 3 7.5 8.209e+00 0.70938 0.8432 0.84130
-#> ds 5 m1 7 16.5 1.544e+01 -1.05567 1.1914 -0.88605
-#> ds 5 m1 7 19.0 1.544e+01 -3.55567 1.1914 -2.98436
-#> ds 5 m1 14 22.9 2.181e+01 -1.08765 1.5498 -0.70181
-#> ds 5 m1 14 23.2 2.181e+01 -1.38765 1.5498 -0.89539
-#> ds 5 m1 28 22.2 2.404e+01 1.83624 1.6805 1.09270
-#> ds 5 m1 28 24.4 2.404e+01 -0.36376 1.6805 -0.21647
-#> ds 5 m1 60 15.5 1.875e+01 3.25390 1.3741 2.36805
-#> ds 5 m1 60 19.8 1.875e+01 -1.04610 1.3741 -0.76131
-#> ds 5 m1 90 14.9 1.380e+01 -1.09507 1.1050 -0.99102
-#> ds 5 m1 90 14.2 1.380e+01 -0.39507 1.1050 -0.35753
-#> ds 5 m1 120 10.9 1.002e+01 -0.88429 0.9205 -0.96069
-#> ds 5 m1 120 10.4 1.002e+01 -0.38429 0.9205 -0.41749</div><div class='input'><span class='co'># }</span>
+#> ds name time observed predicted residual std standardized
+#> ds 1 parent 0 89.8 9.838e+01 8.584661 7.7094 1.113536
+#> ds 1 parent 0 104.1 9.838e+01 -5.715339 7.7094 -0.741350
+#> ds 1 parent 1 88.7 9.388e+01 5.182489 7.3611 0.704041
+#> ds 1 parent 1 95.5 9.388e+01 -1.617511 7.3611 -0.219739
+#> ds 1 parent 3 81.8 8.563e+01 3.825382 6.7229 0.569010
+#> ds 1 parent 3 94.5 8.563e+01 -8.874618 6.7229 -1.320062
+#> ds 1 parent 7 71.5 7.169e+01 0.188290 5.6482 0.033336
+#> ds 1 parent 7 70.3 7.169e+01 1.388290 5.6482 0.245795
+#> ds 1 parent 14 54.2 5.361e+01 -0.586595 4.2624 -0.137621
+#> ds 1 parent 14 49.6 5.361e+01 4.013405 4.2624 0.941587
+#> ds 1 parent 28 31.5 3.219e+01 0.688936 2.6496 0.260011
+#> ds 1 parent 28 28.8 3.219e+01 3.388936 2.6496 1.279016
+#> ds 1 parent 60 12.1 1.278e+01 0.678998 1.3145 0.516562
+#> ds 1 parent 60 13.6 1.278e+01 -0.821002 1.3145 -0.624595
+#> ds 1 parent 90 6.2 6.157e+00 -0.043461 0.9835 -0.044188
+#> ds 1 parent 90 8.3 6.157e+00 -2.143461 0.9835 -2.179316
+#> ds 1 parent 120 2.2 3.076e+00 0.876218 0.8916 0.982775
+#> ds 1 parent 120 2.4 3.076e+00 0.676218 0.8916 0.758453
+#> ds 1 m1 1 0.3 1.134e+00 0.833749 0.8633 0.965750
+#> ds 1 m1 1 0.2 1.134e+00 0.933749 0.8633 1.081583
+#> ds 1 m1 3 2.2 3.157e+00 0.957400 0.8933 1.071763
+#> ds 1 m1 3 3.0 3.157e+00 0.157400 0.8933 0.176202
+#> ds 1 m1 7 6.5 6.369e+00 -0.130995 0.9917 -0.132090
+#> ds 1 m1 7 5.0 6.369e+00 1.369005 0.9917 1.380438
+#> ds 1 m1 14 10.2 9.971e+00 -0.229362 1.1577 -0.198112
+#> ds 1 m1 14 9.5 9.971e+00 0.470638 1.1577 0.406513
+#> ds 1 m1 28 12.2 1.265e+01 0.447735 1.3067 0.342637
+#> ds 1 m1 28 13.4 1.265e+01 -0.752265 1.3067 -0.575683
+#> ds 1 m1 60 11.8 1.097e+01 -0.832027 1.2112 -0.686945
+#> ds 1 m1 60 13.2 1.097e+01 -2.232027 1.2112 -1.842825
+#> ds 1 m1 90 6.6 7.876e+00 1.275985 1.0553 1.209109
+#> ds 1 m1 90 9.3 7.876e+00 -1.424015 1.0553 -1.349381
+#> ds 1 m1 120 3.5 5.336e+00 1.835829 0.9540 1.924292
+#> ds 1 m1 120 5.4 5.336e+00 -0.064171 0.9540 -0.067263
+#> ds 2 parent 0 118.0 1.092e+02 -8.812058 8.5459 -1.031142
+#> ds 2 parent 0 99.8 1.092e+02 9.387942 8.5459 1.098529
+#> ds 2 parent 1 90.2 1.023e+02 12.114268 8.0135 1.511724
+#> ds 2 parent 1 94.6 1.023e+02 7.714268 8.0135 0.962654
+#> ds 2 parent 3 96.1 9.066e+01 -5.436165 7.1122 -0.764344
+#> ds 2 parent 3 78.4 9.066e+01 12.263835 7.1122 1.724339
+#> ds 2 parent 7 77.9 7.365e+01 -4.245773 5.7995 -0.732090
+#> ds 2 parent 7 77.7 7.365e+01 -4.045773 5.7995 -0.697604
+#> ds 2 parent 14 56.0 5.593e+01 -0.073803 4.4389 -0.016626
+#> ds 2 parent 14 54.7 5.593e+01 1.226197 4.4389 0.276236
+#> ds 2 parent 28 36.6 3.892e+01 2.320837 3.1502 0.736737
+#> ds 2 parent 28 36.8 3.892e+01 2.120837 3.1502 0.673248
+#> ds 2 parent 60 22.1 2.136e+01 -0.741020 1.8719 -0.395868
+#> ds 2 parent 60 24.7 2.136e+01 -3.341020 1.8719 -1.784841
+#> ds 2 parent 90 12.4 1.251e+01 0.113999 1.2989 0.087765
+#> ds 2 parent 90 10.8 1.251e+01 1.713999 1.2989 1.319575
+#> ds 2 parent 120 6.8 7.338e+00 0.537708 1.0315 0.521281
+#> ds 2 parent 120 7.9 7.338e+00 -0.562292 1.0315 -0.545113
+#> ds 2 m1 1 1.3 1.576e+00 0.276176 0.8675 0.318352
+#> ds 2 m1 3 3.7 4.177e+00 0.476741 0.9183 0.519146
+#> ds 2 m1 3 4.7 4.177e+00 -0.523259 0.9183 -0.569801
+#> ds 2 m1 7 8.1 7.724e+00 -0.376365 1.0485 -0.358970
+#> ds 2 m1 7 7.9 7.724e+00 -0.176365 1.0485 -0.168214
+#> ds 2 m1 14 10.1 1.077e+01 0.674433 1.2006 0.561738
+#> ds 2 m1 14 10.3 1.077e+01 0.474433 1.2006 0.395158
+#> ds 2 m1 28 10.7 1.212e+01 1.416179 1.2758 1.110010
+#> ds 2 m1 28 12.2 1.212e+01 -0.083821 1.2758 -0.065699
+#> ds 2 m1 60 10.7 1.041e+01 -0.294930 1.1807 -0.249793
+#> ds 2 m1 60 12.5 1.041e+01 -2.094930 1.1807 -1.774316
+#> ds 2 m1 90 9.1 8.079e+00 -1.020859 1.0646 -0.958929
+#> ds 2 m1 90 7.4 8.079e+00 0.679141 1.0646 0.637941
+#> ds 2 m1 120 6.1 5.968e+00 -0.131673 0.9765 -0.134843
+#> ds 2 m1 120 4.5 5.968e+00 1.468327 0.9765 1.503683
+#> ds 3 parent 0 106.2 1.036e+02 -2.638248 8.1101 -0.325303
+#> ds 3 parent 0 106.9 1.036e+02 -3.338248 8.1101 -0.411614
+#> ds 3 parent 1 107.4 9.580e+01 -11.600063 7.5094 -1.544743
+#> ds 3 parent 1 96.1 9.580e+01 -0.300063 7.5094 -0.039958
+#> ds 3 parent 3 79.4 8.297e+01 3.574516 6.5182 0.548391
+#> ds 3 parent 3 82.6 8.297e+01 0.374516 6.5182 0.057457
+#> ds 3 parent 7 63.9 6.517e+01 1.272397 5.1472 0.247200
+#> ds 3 parent 7 62.4 6.517e+01 2.772397 5.1472 0.538618
+#> ds 3 parent 14 51.0 4.821e+01 -2.790075 3.8512 -0.724475
+#> ds 3 parent 14 47.1 4.821e+01 1.109925 3.8512 0.288205
+#> ds 3 parent 28 36.1 3.385e+01 -2.250573 2.7723 -0.811811
+#> ds 3 parent 28 36.6 3.385e+01 -2.750573 2.7723 -0.992168
+#> ds 3 parent 60 20.1 1.964e+01 -0.455700 1.7543 -0.259760
+#> ds 3 parent 60 19.8 1.964e+01 -0.155700 1.7543 -0.088753
+#> ds 3 parent 90 11.3 1.210e+01 0.795458 1.2746 0.624068
+#> ds 3 parent 90 10.7 1.210e+01 1.395458 1.2746 1.094792
+#> ds 3 parent 120 8.2 7.451e+00 -0.749141 1.0364 -0.722816
+#> ds 3 parent 120 7.3 7.451e+00 0.150859 1.0364 0.145558
+#> ds 3 m1 0 0.8 3.695e-13 -0.800000 0.8588 -0.931542
+#> ds 3 m1 1 1.8 1.740e+00 -0.059741 0.8694 -0.068714
+#> ds 3 m1 1 2.3 1.740e+00 -0.559741 0.8694 -0.643812
+#> ds 3 m1 3 4.2 4.531e+00 0.331379 0.9285 0.356913
+#> ds 3 m1 3 4.1 4.531e+00 0.431379 0.9285 0.464618
+#> ds 3 m1 7 6.8 8.113e+00 1.312762 1.0661 1.231333
+#> ds 3 m1 7 10.1 8.113e+00 -1.987238 1.0661 -1.863971
+#> ds 3 m1 14 11.4 1.079e+01 -0.613266 1.2013 -0.510507
+#> ds 3 m1 14 12.8 1.079e+01 -2.013266 1.2013 -1.675923
+#> ds 3 m1 28 11.5 1.133e+01 -0.174252 1.2310 -0.141553
+#> ds 3 m1 28 10.6 1.133e+01 0.725748 1.2310 0.589558
+#> ds 3 m1 60 7.5 8.948e+00 1.448281 1.1059 1.309561
+#> ds 3 m1 60 8.6 8.948e+00 0.348281 1.1059 0.314922
+#> ds 3 m1 90 7.3 6.665e+00 -0.634932 1.0034 -0.632752
+#> ds 3 m1 90 8.1 6.665e+00 -1.434932 1.0034 -1.430004
+#> ds 3 m1 120 5.3 4.795e+00 -0.504936 0.9365 -0.539199
+#> ds 3 m1 120 3.8 4.795e+00 0.995064 0.9365 1.062586
+#> ds 4 parent 0 104.7 9.985e+01 -4.850494 7.8227 -0.620050
+#> ds 4 parent 0 88.3 9.985e+01 11.549506 7.8227 1.476402
+#> ds 4 parent 1 94.2 9.676e+01 2.556304 7.5834 0.337093
+#> ds 4 parent 1 94.6 9.676e+01 2.156304 7.5834 0.284346
+#> ds 4 parent 3 78.1 9.092e+01 12.817485 7.1318 1.797230
+#> ds 4 parent 3 96.5 9.092e+01 -5.582515 7.1318 -0.782764
+#> ds 4 parent 7 76.2 8.050e+01 4.297338 6.3270 0.679204
+#> ds 4 parent 7 77.8 8.050e+01 2.697338 6.3270 0.426320
+#> ds 4 parent 14 70.8 6.562e+01 -5.179989 5.1816 -0.999687
+#> ds 4 parent 14 67.3 6.562e+01 -1.679989 5.1816 -0.324222
+#> ds 4 parent 28 43.1 4.499e+01 1.886936 3.6069 0.523140
+#> ds 4 parent 28 45.1 4.499e+01 -0.113064 3.6069 -0.031346
+#> ds 4 parent 60 21.3 2.151e+01 0.214840 1.8827 0.114114
+#> ds 4 parent 60 23.5 2.151e+01 -1.985160 1.8827 -1.054433
+#> ds 4 parent 90 11.8 1.190e+01 0.098528 1.2633 0.077990
+#> ds 4 parent 90 12.1 1.190e+01 -0.201472 1.2633 -0.159475
+#> ds 4 parent 120 7.0 6.886e+00 -0.113832 1.0125 -0.112431
+#> ds 4 parent 120 6.2 6.886e+00 0.686168 1.0125 0.677724
+#> ds 4 m1 0 1.6 4.263e-14 -1.600000 0.8588 -1.863085
+#> ds 4 m1 1 0.9 7.140e-01 -0.185984 0.8606 -0.216112
+#> ds 4 m1 3 3.7 2.022e+00 -1.678243 0.8731 -1.922160
+#> ds 4 m1 3 2.0 2.022e+00 0.021757 0.8731 0.024919
+#> ds 4 m1 7 3.6 4.207e+00 0.607229 0.9192 0.660633
+#> ds 4 m1 7 3.8 4.207e+00 0.407229 0.9192 0.443044
+#> ds 4 m1 14 7.1 6.912e+00 -0.188339 1.0135 -0.185828
+#> ds 4 m1 14 6.6 6.912e+00 0.311661 1.0135 0.307506
+#> ds 4 m1 28 9.5 9.449e+00 -0.050714 1.1309 -0.044843
+#> ds 4 m1 28 9.3 9.449e+00 0.149286 1.1309 0.132004
+#> ds 4 m1 60 8.3 8.997e+00 0.697403 1.1083 0.629230
+#> ds 4 m1 60 9.0 8.997e+00 -0.002597 1.1083 -0.002343
+#> ds 4 m1 90 6.6 6.697e+00 0.096928 1.0047 0.096472
+#> ds 4 m1 90 7.7 6.697e+00 -1.003072 1.0047 -0.998348
+#> ds 4 m1 120 3.7 4.622e+00 0.921607 0.9312 0.989749
+#> ds 4 m1 120 3.5 4.622e+00 1.121607 0.9312 1.204537
+#> ds 5 parent 0 110.4 1.045e+02 -5.942426 8.1795 -0.726502
+#> ds 5 parent 0 112.1 1.045e+02 -7.642426 8.1795 -0.934338
+#> ds 5 parent 1 93.5 9.739e+01 3.893915 7.6327 0.510162
+#> ds 5 parent 1 91.0 9.739e+01 6.393915 7.6327 0.837700
+#> ds 5 parent 3 71.0 8.519e+01 14.188275 6.6891 2.121098
+#> ds 5 parent 3 89.7 8.519e+01 -4.511725 6.6891 -0.674487
+#> ds 5 parent 7 60.4 6.684e+01 6.439546 5.2753 1.220701
+#> ds 5 parent 7 59.1 6.684e+01 7.739546 5.2753 1.467133
+#> ds 5 parent 14 56.5 4.736e+01 -9.138979 3.7868 -2.413407
+#> ds 5 parent 14 47.0 4.736e+01 0.361021 3.7868 0.095338
+#> ds 5 parent 28 30.2 3.033e+01 0.131178 2.5132 0.052195
+#> ds 5 parent 28 23.9 3.033e+01 6.431178 2.5132 2.558936
+#> ds 5 parent 60 17.0 1.771e+01 0.705246 1.6243 0.434177
+#> ds 5 parent 60 18.7 1.771e+01 -0.994754 1.6243 -0.612409
+#> ds 5 parent 90 11.3 1.180e+01 0.504856 1.2580 0.401315
+#> ds 5 parent 90 11.9 1.180e+01 -0.095144 1.2580 -0.075631
+#> ds 5 parent 120 9.0 7.917e+00 -1.083499 1.0571 -1.024928
+#> ds 5 parent 120 8.1 7.917e+00 -0.183499 1.0571 -0.173579
+#> ds 5 m1 0 0.7 3.553e-15 -0.700000 0.8588 -0.815100
+#> ds 5 m1 1 3.0 3.204e+00 0.204414 0.8943 0.228572
+#> ds 5 m1 1 2.6 3.204e+00 0.604414 0.8943 0.675845
+#> ds 5 m1 3 5.1 8.586e+00 3.485889 1.0884 3.202858
+#> ds 5 m1 3 7.5 8.586e+00 1.085889 1.0884 0.997722
+#> ds 5 m1 7 16.5 1.612e+01 -0.376855 1.5211 -0.247743
+#> ds 5 m1 7 19.0 1.612e+01 -2.876855 1.5211 -1.891237
+#> ds 5 m1 14 22.9 2.267e+01 -0.228264 1.9633 -0.116267
+#> ds 5 m1 14 23.2 2.267e+01 -0.528264 1.9633 -0.269072
+#> ds 5 m1 28 22.2 2.468e+01 2.480178 2.1050 1.178211
+#> ds 5 m1 28 24.4 2.468e+01 0.280178 2.1050 0.133099
+#> ds 5 m1 60 15.5 1.860e+01 3.099615 1.6838 1.840794
+#> ds 5 m1 60 19.8 1.860e+01 -1.200385 1.6838 -0.712883
+#> ds 5 m1 90 14.9 1.326e+01 -1.636345 1.3433 -1.218195
+#> ds 5 m1 90 14.2 1.326e+01 -0.936345 1.3433 -0.697072
+#> ds 5 m1 120 10.9 9.348e+00 -1.551535 1.1258 -1.378133
+#> ds 5 m1 120 10.4 9.348e+00 -1.051535 1.1258 -0.934014</div><div class='input'><span class='co'># }</span>
</div></pre>
</div>
--
cgit v1.2.1
From 0c9b2f0e3c8ce65cb790c9e048476784cbbea070 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Fri, 11 Jun 2021 11:14:45 +0200
Subject: Finished 'summary.nlmixr.mmkin', checks, docs
---
docs/dev/reference/summary.saem.mmkin.html | 358 ++++++++++++++---------------
1 file changed, 179 insertions(+), 179 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index 1166abb1..fdfdaf4b 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -76,7 +76,7 @@ endpoints such as formation fractions and DT50 values. Optionally
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.4.9000</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.5</span>
</span>
</div>
@@ -260,15 +260,15 @@ saemix authors for the parts inherited from saemix.</p>
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Tue Mar 9 17:35:19 2021"
+#> [1] "Fri Jun 11 10:58:28 2021"
#> ....
#> Minimisation finished
-#> [1] "Tue Mar 9 17:35:30 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+#> [1] "Fri Jun 11 10:58:40 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
-#> mkin version used for pre-fitting: 1.0.4.9000
-#> R version used for fitting: 4.0.4
-#> Date of fit: Tue Mar 9 17:35:31 2021
-#> Date of summary: Tue Mar 9 17:35:31 2021
+#> mkin version used for pre-fitting: 1.0.5
+#> R version used for fitting: 4.1.0
+#> Date of fit: Fri Jun 11 10:58:41 2021
+#> Date of summary: Fri Jun 11 10:58:41 2021
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -283,7 +283,7 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 12.058 s using 300, 100 iterations
+#> Fitted in 12.75 s using 300, 100 iterations
#>
#> Variance model: Two-component variance function
#>
@@ -354,177 +354,177 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Data:
#> ds name time observed predicted residual std standardized
-#> ds 1 parent 0 89.8 9.838e+01 8.584661 7.7094 1.113536
-#> ds 1 parent 0 104.1 9.838e+01 -5.715339 7.7094 -0.741350
-#> ds 1 parent 1 88.7 9.388e+01 5.182489 7.3611 0.704041
-#> ds 1 parent 1 95.5 9.388e+01 -1.617511 7.3611 -0.219739
-#> ds 1 parent 3 81.8 8.563e+01 3.825382 6.7229 0.569010
-#> ds 1 parent 3 94.5 8.563e+01 -8.874618 6.7229 -1.320062
-#> ds 1 parent 7 71.5 7.169e+01 0.188290 5.6482 0.033336
-#> ds 1 parent 7 70.3 7.169e+01 1.388290 5.6482 0.245795
-#> ds 1 parent 14 54.2 5.361e+01 -0.586595 4.2624 -0.137621
-#> ds 1 parent 14 49.6 5.361e+01 4.013405 4.2624 0.941587
-#> ds 1 parent 28 31.5 3.219e+01 0.688936 2.6496 0.260011
-#> ds 1 parent 28 28.8 3.219e+01 3.388936 2.6496 1.279016
-#> ds 1 parent 60 12.1 1.278e+01 0.678998 1.3145 0.516562
-#> ds 1 parent 60 13.6 1.278e+01 -0.821002 1.3145 -0.624595
-#> ds 1 parent 90 6.2 6.157e+00 -0.043461 0.9835 -0.044188
-#> ds 1 parent 90 8.3 6.157e+00 -2.143461 0.9835 -2.179316
-#> ds 1 parent 120 2.2 3.076e+00 0.876218 0.8916 0.982775
-#> ds 1 parent 120 2.4 3.076e+00 0.676218 0.8916 0.758453
-#> ds 1 m1 1 0.3 1.134e+00 0.833749 0.8633 0.965750
-#> ds 1 m1 1 0.2 1.134e+00 0.933749 0.8633 1.081583
-#> ds 1 m1 3 2.2 3.157e+00 0.957400 0.8933 1.071763
-#> ds 1 m1 3 3.0 3.157e+00 0.157400 0.8933 0.176202
-#> ds 1 m1 7 6.5 6.369e+00 -0.130995 0.9917 -0.132090
-#> ds 1 m1 7 5.0 6.369e+00 1.369005 0.9917 1.380438
-#> ds 1 m1 14 10.2 9.971e+00 -0.229362 1.1577 -0.198112
-#> ds 1 m1 14 9.5 9.971e+00 0.470638 1.1577 0.406513
-#> ds 1 m1 28 12.2 1.265e+01 0.447735 1.3067 0.342637
-#> ds 1 m1 28 13.4 1.265e+01 -0.752265 1.3067 -0.575683
-#> ds 1 m1 60 11.8 1.097e+01 -0.832027 1.2112 -0.686945
-#> ds 1 m1 60 13.2 1.097e+01 -2.232027 1.2112 -1.842825
-#> ds 1 m1 90 6.6 7.876e+00 1.275985 1.0553 1.209109
-#> ds 1 m1 90 9.3 7.876e+00 -1.424015 1.0553 -1.349381
-#> ds 1 m1 120 3.5 5.336e+00 1.835829 0.9540 1.924292
-#> ds 1 m1 120 5.4 5.336e+00 -0.064171 0.9540 -0.067263
-#> ds 2 parent 0 118.0 1.092e+02 -8.812058 8.5459 -1.031142
-#> ds 2 parent 0 99.8 1.092e+02 9.387942 8.5459 1.098529
-#> ds 2 parent 1 90.2 1.023e+02 12.114268 8.0135 1.511724
-#> ds 2 parent 1 94.6 1.023e+02 7.714268 8.0135 0.962654
-#> ds 2 parent 3 96.1 9.066e+01 -5.436165 7.1122 -0.764344
-#> ds 2 parent 3 78.4 9.066e+01 12.263835 7.1122 1.724339
-#> ds 2 parent 7 77.9 7.365e+01 -4.245773 5.7995 -0.732090
-#> ds 2 parent 7 77.7 7.365e+01 -4.045773 5.7995 -0.697604
-#> ds 2 parent 14 56.0 5.593e+01 -0.073803 4.4389 -0.016626
-#> ds 2 parent 14 54.7 5.593e+01 1.226197 4.4389 0.276236
-#> ds 2 parent 28 36.6 3.892e+01 2.320837 3.1502 0.736737
-#> ds 2 parent 28 36.8 3.892e+01 2.120837 3.1502 0.673248
-#> ds 2 parent 60 22.1 2.136e+01 -0.741020 1.8719 -0.395868
-#> ds 2 parent 60 24.7 2.136e+01 -3.341020 1.8719 -1.784841
-#> ds 2 parent 90 12.4 1.251e+01 0.113999 1.2989 0.087765
-#> ds 2 parent 90 10.8 1.251e+01 1.713999 1.2989 1.319575
-#> ds 2 parent 120 6.8 7.338e+00 0.537708 1.0315 0.521281
-#> ds 2 parent 120 7.9 7.338e+00 -0.562292 1.0315 -0.545113
-#> ds 2 m1 1 1.3 1.576e+00 0.276176 0.8675 0.318352
-#> ds 2 m1 3 3.7 4.177e+00 0.476741 0.9183 0.519146
-#> ds 2 m1 3 4.7 4.177e+00 -0.523259 0.9183 -0.569801
-#> ds 2 m1 7 8.1 7.724e+00 -0.376365 1.0485 -0.358970
-#> ds 2 m1 7 7.9 7.724e+00 -0.176365 1.0485 -0.168214
-#> ds 2 m1 14 10.1 1.077e+01 0.674433 1.2006 0.561738
-#> ds 2 m1 14 10.3 1.077e+01 0.474433 1.2006 0.395158
-#> ds 2 m1 28 10.7 1.212e+01 1.416179 1.2758 1.110010
-#> ds 2 m1 28 12.2 1.212e+01 -0.083821 1.2758 -0.065699
-#> ds 2 m1 60 10.7 1.041e+01 -0.294930 1.1807 -0.249793
-#> ds 2 m1 60 12.5 1.041e+01 -2.094930 1.1807 -1.774316
-#> ds 2 m1 90 9.1 8.079e+00 -1.020859 1.0646 -0.958929
-#> ds 2 m1 90 7.4 8.079e+00 0.679141 1.0646 0.637941
-#> ds 2 m1 120 6.1 5.968e+00 -0.131673 0.9765 -0.134843
-#> ds 2 m1 120 4.5 5.968e+00 1.468327 0.9765 1.503683
-#> ds 3 parent 0 106.2 1.036e+02 -2.638248 8.1101 -0.325303
-#> ds 3 parent 0 106.9 1.036e+02 -3.338248 8.1101 -0.411614
-#> ds 3 parent 1 107.4 9.580e+01 -11.600063 7.5094 -1.544743
-#> ds 3 parent 1 96.1 9.580e+01 -0.300063 7.5094 -0.039958
-#> ds 3 parent 3 79.4 8.297e+01 3.574516 6.5182 0.548391
-#> ds 3 parent 3 82.6 8.297e+01 0.374516 6.5182 0.057457
-#> ds 3 parent 7 63.9 6.517e+01 1.272397 5.1472 0.247200
-#> ds 3 parent 7 62.4 6.517e+01 2.772397 5.1472 0.538618
-#> ds 3 parent 14 51.0 4.821e+01 -2.790075 3.8512 -0.724475
-#> ds 3 parent 14 47.1 4.821e+01 1.109925 3.8512 0.288205
-#> ds 3 parent 28 36.1 3.385e+01 -2.250573 2.7723 -0.811811
-#> ds 3 parent 28 36.6 3.385e+01 -2.750573 2.7723 -0.992168
-#> ds 3 parent 60 20.1 1.964e+01 -0.455700 1.7543 -0.259760
-#> ds 3 parent 60 19.8 1.964e+01 -0.155700 1.7543 -0.088753
-#> ds 3 parent 90 11.3 1.210e+01 0.795458 1.2746 0.624068
-#> ds 3 parent 90 10.7 1.210e+01 1.395458 1.2746 1.094792
-#> ds 3 parent 120 8.2 7.451e+00 -0.749141 1.0364 -0.722816
-#> ds 3 parent 120 7.3 7.451e+00 0.150859 1.0364 0.145558
-#> ds 3 m1 0 0.8 3.695e-13 -0.800000 0.8588 -0.931542
-#> ds 3 m1 1 1.8 1.740e+00 -0.059741 0.8694 -0.068714
-#> ds 3 m1 1 2.3 1.740e+00 -0.559741 0.8694 -0.643812
-#> ds 3 m1 3 4.2 4.531e+00 0.331379 0.9285 0.356913
-#> ds 3 m1 3 4.1 4.531e+00 0.431379 0.9285 0.464618
-#> ds 3 m1 7 6.8 8.113e+00 1.312762 1.0661 1.231333
-#> ds 3 m1 7 10.1 8.113e+00 -1.987238 1.0661 -1.863971
-#> ds 3 m1 14 11.4 1.079e+01 -0.613266 1.2013 -0.510507
-#> ds 3 m1 14 12.8 1.079e+01 -2.013266 1.2013 -1.675923
-#> ds 3 m1 28 11.5 1.133e+01 -0.174252 1.2310 -0.141553
-#> ds 3 m1 28 10.6 1.133e+01 0.725748 1.2310 0.589558
-#> ds 3 m1 60 7.5 8.948e+00 1.448281 1.1059 1.309561
-#> ds 3 m1 60 8.6 8.948e+00 0.348281 1.1059 0.314922
-#> ds 3 m1 90 7.3 6.665e+00 -0.634932 1.0034 -0.632752
-#> ds 3 m1 90 8.1 6.665e+00 -1.434932 1.0034 -1.430004
-#> ds 3 m1 120 5.3 4.795e+00 -0.504936 0.9365 -0.539199
-#> ds 3 m1 120 3.8 4.795e+00 0.995064 0.9365 1.062586
-#> ds 4 parent 0 104.7 9.985e+01 -4.850494 7.8227 -0.620050
-#> ds 4 parent 0 88.3 9.985e+01 11.549506 7.8227 1.476402
-#> ds 4 parent 1 94.2 9.676e+01 2.556304 7.5834 0.337093
-#> ds 4 parent 1 94.6 9.676e+01 2.156304 7.5834 0.284346
-#> ds 4 parent 3 78.1 9.092e+01 12.817485 7.1318 1.797230
-#> ds 4 parent 3 96.5 9.092e+01 -5.582515 7.1318 -0.782764
-#> ds 4 parent 7 76.2 8.050e+01 4.297338 6.3270 0.679204
-#> ds 4 parent 7 77.8 8.050e+01 2.697338 6.3270 0.426320
-#> ds 4 parent 14 70.8 6.562e+01 -5.179989 5.1816 -0.999687
-#> ds 4 parent 14 67.3 6.562e+01 -1.679989 5.1816 -0.324222
-#> ds 4 parent 28 43.1 4.499e+01 1.886936 3.6069 0.523140
-#> ds 4 parent 28 45.1 4.499e+01 -0.113064 3.6069 -0.031346
-#> ds 4 parent 60 21.3 2.151e+01 0.214840 1.8827 0.114114
-#> ds 4 parent 60 23.5 2.151e+01 -1.985160 1.8827 -1.054433
-#> ds 4 parent 90 11.8 1.190e+01 0.098528 1.2633 0.077990
-#> ds 4 parent 90 12.1 1.190e+01 -0.201472 1.2633 -0.159475
-#> ds 4 parent 120 7.0 6.886e+00 -0.113832 1.0125 -0.112431
-#> ds 4 parent 120 6.2 6.886e+00 0.686168 1.0125 0.677724
-#> ds 4 m1 0 1.6 4.263e-14 -1.600000 0.8588 -1.863085
-#> ds 4 m1 1 0.9 7.140e-01 -0.185984 0.8606 -0.216112
-#> ds 4 m1 3 3.7 2.022e+00 -1.678243 0.8731 -1.922160
-#> ds 4 m1 3 2.0 2.022e+00 0.021757 0.8731 0.024919
-#> ds 4 m1 7 3.6 4.207e+00 0.607229 0.9192 0.660633
-#> ds 4 m1 7 3.8 4.207e+00 0.407229 0.9192 0.443044
-#> ds 4 m1 14 7.1 6.912e+00 -0.188339 1.0135 -0.185828
-#> ds 4 m1 14 6.6 6.912e+00 0.311661 1.0135 0.307506
-#> ds 4 m1 28 9.5 9.449e+00 -0.050714 1.1309 -0.044843
-#> ds 4 m1 28 9.3 9.449e+00 0.149286 1.1309 0.132004
-#> ds 4 m1 60 8.3 8.997e+00 0.697403 1.1083 0.629230
-#> ds 4 m1 60 9.0 8.997e+00 -0.002597 1.1083 -0.002343
-#> ds 4 m1 90 6.6 6.697e+00 0.096928 1.0047 0.096472
-#> ds 4 m1 90 7.7 6.697e+00 -1.003072 1.0047 -0.998348
-#> ds 4 m1 120 3.7 4.622e+00 0.921607 0.9312 0.989749
-#> ds 4 m1 120 3.5 4.622e+00 1.121607 0.9312 1.204537
-#> ds 5 parent 0 110.4 1.045e+02 -5.942426 8.1795 -0.726502
-#> ds 5 parent 0 112.1 1.045e+02 -7.642426 8.1795 -0.934338
-#> ds 5 parent 1 93.5 9.739e+01 3.893915 7.6327 0.510162
-#> ds 5 parent 1 91.0 9.739e+01 6.393915 7.6327 0.837700
-#> ds 5 parent 3 71.0 8.519e+01 14.188275 6.6891 2.121098
-#> ds 5 parent 3 89.7 8.519e+01 -4.511725 6.6891 -0.674487
-#> ds 5 parent 7 60.4 6.684e+01 6.439546 5.2753 1.220701
-#> ds 5 parent 7 59.1 6.684e+01 7.739546 5.2753 1.467133
-#> ds 5 parent 14 56.5 4.736e+01 -9.138979 3.7868 -2.413407
-#> ds 5 parent 14 47.0 4.736e+01 0.361021 3.7868 0.095338
-#> ds 5 parent 28 30.2 3.033e+01 0.131178 2.5132 0.052195
-#> ds 5 parent 28 23.9 3.033e+01 6.431178 2.5132 2.558936
-#> ds 5 parent 60 17.0 1.771e+01 0.705246 1.6243 0.434177
-#> ds 5 parent 60 18.7 1.771e+01 -0.994754 1.6243 -0.612409
-#> ds 5 parent 90 11.3 1.180e+01 0.504856 1.2580 0.401315
-#> ds 5 parent 90 11.9 1.180e+01 -0.095144 1.2580 -0.075631
-#> ds 5 parent 120 9.0 7.917e+00 -1.083499 1.0571 -1.024928
-#> ds 5 parent 120 8.1 7.917e+00 -0.183499 1.0571 -0.173579
-#> ds 5 m1 0 0.7 3.553e-15 -0.700000 0.8588 -0.815100
-#> ds 5 m1 1 3.0 3.204e+00 0.204414 0.8943 0.228572
-#> ds 5 m1 1 2.6 3.204e+00 0.604414 0.8943 0.675845
-#> ds 5 m1 3 5.1 8.586e+00 3.485889 1.0884 3.202858
-#> ds 5 m1 3 7.5 8.586e+00 1.085889 1.0884 0.997722
-#> ds 5 m1 7 16.5 1.612e+01 -0.376855 1.5211 -0.247743
-#> ds 5 m1 7 19.0 1.612e+01 -2.876855 1.5211 -1.891237
-#> ds 5 m1 14 22.9 2.267e+01 -0.228264 1.9633 -0.116267
-#> ds 5 m1 14 23.2 2.267e+01 -0.528264 1.9633 -0.269072
-#> ds 5 m1 28 22.2 2.468e+01 2.480178 2.1050 1.178211
-#> ds 5 m1 28 24.4 2.468e+01 0.280178 2.1050 0.133099
-#> ds 5 m1 60 15.5 1.860e+01 3.099615 1.6838 1.840794
-#> ds 5 m1 60 19.8 1.860e+01 -1.200385 1.6838 -0.712883
-#> ds 5 m1 90 14.9 1.326e+01 -1.636345 1.3433 -1.218195
-#> ds 5 m1 90 14.2 1.326e+01 -0.936345 1.3433 -0.697072
-#> ds 5 m1 120 10.9 9.348e+00 -1.551535 1.1258 -1.378133
-#> ds 5 m1 120 10.4 9.348e+00 -1.051535 1.1258 -0.934014</div><div class='input'><span class='co'># }</span>
+#> ds 1 parent 0 89.8 9.838e+01 -8.584661 7.7094 -1.113536
+#> ds 1 parent 0 104.1 9.838e+01 5.715339 7.7094 0.741350
+#> ds 1 parent 1 88.7 9.388e+01 -5.182489 7.3611 -0.704041
+#> ds 1 parent 1 95.5 9.388e+01 1.617511 7.3611 0.219739
+#> ds 1 parent 3 81.8 8.563e+01 -3.825382 6.7229 -0.569010
+#> ds 1 parent 3 94.5 8.563e+01 8.874618 6.7229 1.320062
+#> ds 1 parent 7 71.5 7.169e+01 -0.188290 5.6482 -0.033336
+#> ds 1 parent 7 70.3 7.169e+01 -1.388290 5.6482 -0.245795
+#> ds 1 parent 14 54.2 5.361e+01 0.586595 4.2624 0.137621
+#> ds 1 parent 14 49.6 5.361e+01 -4.013405 4.2624 -0.941587
+#> ds 1 parent 28 31.5 3.219e+01 -0.688936 2.6496 -0.260011
+#> ds 1 parent 28 28.8 3.219e+01 -3.388936 2.6496 -1.279016
+#> ds 1 parent 60 12.1 1.278e+01 -0.678998 1.3145 -0.516562
+#> ds 1 parent 60 13.6 1.278e+01 0.821002 1.3145 0.624595
+#> ds 1 parent 90 6.2 6.157e+00 0.043461 0.9835 0.044188
+#> ds 1 parent 90 8.3 6.157e+00 2.143461 0.9835 2.179316
+#> ds 1 parent 120 2.2 3.076e+00 -0.876218 0.8916 -0.982775
+#> ds 1 parent 120 2.4 3.076e+00 -0.676218 0.8916 -0.758453
+#> ds 1 m1 1 0.3 1.134e+00 -0.833749 0.8633 -0.965750
+#> ds 1 m1 1 0.2 1.134e+00 -0.933749 0.8633 -1.081583
+#> ds 1 m1 3 2.2 3.157e+00 -0.957400 0.8933 -1.071763
+#> ds 1 m1 3 3.0 3.157e+00 -0.157400 0.8933 -0.176202
+#> ds 1 m1 7 6.5 6.369e+00 0.130995 0.9917 0.132090
+#> ds 1 m1 7 5.0 6.369e+00 -1.369005 0.9917 -1.380438
+#> ds 1 m1 14 10.2 9.971e+00 0.229362 1.1577 0.198112
+#> ds 1 m1 14 9.5 9.971e+00 -0.470638 1.1577 -0.406513
+#> ds 1 m1 28 12.2 1.265e+01 -0.447735 1.3067 -0.342637
+#> ds 1 m1 28 13.4 1.265e+01 0.752265 1.3067 0.575683
+#> ds 1 m1 60 11.8 1.097e+01 0.832027 1.2112 0.686945
+#> ds 1 m1 60 13.2 1.097e+01 2.232027 1.2112 1.842825
+#> ds 1 m1 90 6.6 7.876e+00 -1.275985 1.0553 -1.209109
+#> ds 1 m1 90 9.3 7.876e+00 1.424015 1.0553 1.349381
+#> ds 1 m1 120 3.5 5.336e+00 -1.835829 0.9540 -1.924292
+#> ds 1 m1 120 5.4 5.336e+00 0.064171 0.9540 0.067263
+#> ds 2 parent 0 118.0 1.092e+02 8.812058 8.5459 1.031142
+#> ds 2 parent 0 99.8 1.092e+02 -9.387942 8.5459 -1.098529
+#> ds 2 parent 1 90.2 1.023e+02 -12.114268 8.0135 -1.511724
+#> ds 2 parent 1 94.6 1.023e+02 -7.714268 8.0135 -0.962654
+#> ds 2 parent 3 96.1 9.066e+01 5.436165 7.1122 0.764344
+#> ds 2 parent 3 78.4 9.066e+01 -12.263835 7.1122 -1.724339
+#> ds 2 parent 7 77.9 7.365e+01 4.245773 5.7995 0.732090
+#> ds 2 parent 7 77.7 7.365e+01 4.045773 5.7995 0.697604
+#> ds 2 parent 14 56.0 5.593e+01 0.073803 4.4389 0.016626
+#> ds 2 parent 14 54.7 5.593e+01 -1.226197 4.4389 -0.276236
+#> ds 2 parent 28 36.6 3.892e+01 -2.320837 3.1502 -0.736737
+#> ds 2 parent 28 36.8 3.892e+01 -2.120837 3.1502 -0.673248
+#> ds 2 parent 60 22.1 2.136e+01 0.741020 1.8719 0.395868
+#> ds 2 parent 60 24.7 2.136e+01 3.341020 1.8719 1.784841
+#> ds 2 parent 90 12.4 1.251e+01 -0.113999 1.2989 -0.087765
+#> ds 2 parent 90 10.8 1.251e+01 -1.713999 1.2989 -1.319575
+#> ds 2 parent 120 6.8 7.338e+00 -0.537708 1.0315 -0.521281
+#> ds 2 parent 120 7.9 7.338e+00 0.562292 1.0315 0.545113
+#> ds 2 m1 1 1.3 1.576e+00 -0.276176 0.8675 -0.318352
+#> ds 2 m1 3 3.7 4.177e+00 -0.476741 0.9183 -0.519146
+#> ds 2 m1 3 4.7 4.177e+00 0.523259 0.9183 0.569801
+#> ds 2 m1 7 8.1 7.724e+00 0.376365 1.0485 0.358970
+#> ds 2 m1 7 7.9 7.724e+00 0.176365 1.0485 0.168214
+#> ds 2 m1 14 10.1 1.077e+01 -0.674433 1.2006 -0.561738
+#> ds 2 m1 14 10.3 1.077e+01 -0.474433 1.2006 -0.395158
+#> ds 2 m1 28 10.7 1.212e+01 -1.416179 1.2758 -1.110010
+#> ds 2 m1 28 12.2 1.212e+01 0.083821 1.2758 0.065699
+#> ds 2 m1 60 10.7 1.041e+01 0.294930 1.1807 0.249793
+#> ds 2 m1 60 12.5 1.041e+01 2.094930 1.1807 1.774316
+#> ds 2 m1 90 9.1 8.079e+00 1.020859 1.0646 0.958929
+#> ds 2 m1 90 7.4 8.079e+00 -0.679141 1.0646 -0.637941
+#> ds 2 m1 120 6.1 5.968e+00 0.131673 0.9765 0.134843
+#> ds 2 m1 120 4.5 5.968e+00 -1.468327 0.9765 -1.503683
+#> ds 3 parent 0 106.2 1.036e+02 2.638248 8.1101 0.325303
+#> ds 3 parent 0 106.9 1.036e+02 3.338248 8.1101 0.411614
+#> ds 3 parent 1 107.4 9.580e+01 11.600063 7.5094 1.544743
+#> ds 3 parent 1 96.1 9.580e+01 0.300063 7.5094 0.039958
+#> ds 3 parent 3 79.4 8.297e+01 -3.574516 6.5182 -0.548391
+#> ds 3 parent 3 82.6 8.297e+01 -0.374516 6.5182 -0.057457
+#> ds 3 parent 7 63.9 6.517e+01 -1.272397 5.1472 -0.247200
+#> ds 3 parent 7 62.4 6.517e+01 -2.772397 5.1472 -0.538618
+#> ds 3 parent 14 51.0 4.821e+01 2.790075 3.8512 0.724475
+#> ds 3 parent 14 47.1 4.821e+01 -1.109925 3.8512 -0.288205
+#> ds 3 parent 28 36.1 3.385e+01 2.250573 2.7723 0.811811
+#> ds 3 parent 28 36.6 3.385e+01 2.750573 2.7723 0.992168
+#> ds 3 parent 60 20.1 1.964e+01 0.455700 1.7543 0.259760
+#> ds 3 parent 60 19.8 1.964e+01 0.155700 1.7543 0.088753
+#> ds 3 parent 90 11.3 1.210e+01 -0.795458 1.2746 -0.624068
+#> ds 3 parent 90 10.7 1.210e+01 -1.395458 1.2746 -1.094792
+#> ds 3 parent 120 8.2 7.451e+00 0.749141 1.0364 0.722816
+#> ds 3 parent 120 7.3 7.451e+00 -0.150859 1.0364 -0.145558
+#> ds 3 m1 0 0.8 3.695e-13 0.800000 0.8588 0.931542
+#> ds 3 m1 1 1.8 1.740e+00 0.059741 0.8694 0.068714
+#> ds 3 m1 1 2.3 1.740e+00 0.559741 0.8694 0.643812
+#> ds 3 m1 3 4.2 4.531e+00 -0.331379 0.9285 -0.356913
+#> ds 3 m1 3 4.1 4.531e+00 -0.431379 0.9285 -0.464618
+#> ds 3 m1 7 6.8 8.113e+00 -1.312762 1.0661 -1.231333
+#> ds 3 m1 7 10.1 8.113e+00 1.987238 1.0661 1.863971
+#> ds 3 m1 14 11.4 1.079e+01 0.613266 1.2013 0.510507
+#> ds 3 m1 14 12.8 1.079e+01 2.013266 1.2013 1.675923
+#> ds 3 m1 28 11.5 1.133e+01 0.174252 1.2310 0.141553
+#> ds 3 m1 28 10.6 1.133e+01 -0.725748 1.2310 -0.589558
+#> ds 3 m1 60 7.5 8.948e+00 -1.448281 1.1059 -1.309561
+#> ds 3 m1 60 8.6 8.948e+00 -0.348281 1.1059 -0.314922
+#> ds 3 m1 90 7.3 6.665e+00 0.634932 1.0034 0.632752
+#> ds 3 m1 90 8.1 6.665e+00 1.434932 1.0034 1.430004
+#> ds 3 m1 120 5.3 4.795e+00 0.504936 0.9365 0.539199
+#> ds 3 m1 120 3.8 4.795e+00 -0.995064 0.9365 -1.062586
+#> ds 4 parent 0 104.7 9.985e+01 4.850494 7.8227 0.620050
+#> ds 4 parent 0 88.3 9.985e+01 -11.549506 7.8227 -1.476402
+#> ds 4 parent 1 94.2 9.676e+01 -2.556304 7.5834 -0.337093
+#> ds 4 parent 1 94.6 9.676e+01 -2.156304 7.5834 -0.284346
+#> ds 4 parent 3 78.1 9.092e+01 -12.817485 7.1318 -1.797230
+#> ds 4 parent 3 96.5 9.092e+01 5.582515 7.1318 0.782764
+#> ds 4 parent 7 76.2 8.050e+01 -4.297338 6.3270 -0.679204
+#> ds 4 parent 7 77.8 8.050e+01 -2.697338 6.3270 -0.426320
+#> ds 4 parent 14 70.8 6.562e+01 5.179989 5.1816 0.999687
+#> ds 4 parent 14 67.3 6.562e+01 1.679989 5.1816 0.324222
+#> ds 4 parent 28 43.1 4.499e+01 -1.886936 3.6069 -0.523140
+#> ds 4 parent 28 45.1 4.499e+01 0.113064 3.6069 0.031346
+#> ds 4 parent 60 21.3 2.151e+01 -0.214840 1.8827 -0.114114
+#> ds 4 parent 60 23.5 2.151e+01 1.985160 1.8827 1.054433
+#> ds 4 parent 90 11.8 1.190e+01 -0.098528 1.2633 -0.077990
+#> ds 4 parent 90 12.1 1.190e+01 0.201472 1.2633 0.159475
+#> ds 4 parent 120 7.0 6.886e+00 0.113832 1.0125 0.112431
+#> ds 4 parent 120 6.2 6.886e+00 -0.686168 1.0125 -0.677724
+#> ds 4 m1 0 1.6 4.263e-14 1.600000 0.8588 1.863085
+#> ds 4 m1 1 0.9 7.140e-01 0.185984 0.8606 0.216112
+#> ds 4 m1 3 3.7 2.022e+00 1.678243 0.8731 1.922160
+#> ds 4 m1 3 2.0 2.022e+00 -0.021757 0.8731 -0.024919
+#> ds 4 m1 7 3.6 4.207e+00 -0.607229 0.9192 -0.660633
+#> ds 4 m1 7 3.8 4.207e+00 -0.407229 0.9192 -0.443044
+#> ds 4 m1 14 7.1 6.912e+00 0.188339 1.0135 0.185828
+#> ds 4 m1 14 6.6 6.912e+00 -0.311661 1.0135 -0.307506
+#> ds 4 m1 28 9.5 9.449e+00 0.050714 1.1309 0.044843
+#> ds 4 m1 28 9.3 9.449e+00 -0.149286 1.1309 -0.132004
+#> ds 4 m1 60 8.3 8.997e+00 -0.697403 1.1083 -0.629230
+#> ds 4 m1 60 9.0 8.997e+00 0.002597 1.1083 0.002343
+#> ds 4 m1 90 6.6 6.697e+00 -0.096928 1.0047 -0.096472
+#> ds 4 m1 90 7.7 6.697e+00 1.003072 1.0047 0.998348
+#> ds 4 m1 120 3.7 4.622e+00 -0.921607 0.9312 -0.989749
+#> ds 4 m1 120 3.5 4.622e+00 -1.121607 0.9312 -1.204537
+#> ds 5 parent 0 110.4 1.045e+02 5.942426 8.1795 0.726502
+#> ds 5 parent 0 112.1 1.045e+02 7.642426 8.1795 0.934338
+#> ds 5 parent 1 93.5 9.739e+01 -3.893915 7.6327 -0.510162
+#> ds 5 parent 1 91.0 9.739e+01 -6.393915 7.6327 -0.837700
+#> ds 5 parent 3 71.0 8.519e+01 -14.188275 6.6891 -2.121098
+#> ds 5 parent 3 89.7 8.519e+01 4.511725 6.6891 0.674487
+#> ds 5 parent 7 60.4 6.684e+01 -6.439546 5.2753 -1.220701
+#> ds 5 parent 7 59.1 6.684e+01 -7.739546 5.2753 -1.467133
+#> ds 5 parent 14 56.5 4.736e+01 9.138979 3.7868 2.413407
+#> ds 5 parent 14 47.0 4.736e+01 -0.361021 3.7868 -0.095338
+#> ds 5 parent 28 30.2 3.033e+01 -0.131178 2.5132 -0.052195
+#> ds 5 parent 28 23.9 3.033e+01 -6.431178 2.5132 -2.558936
+#> ds 5 parent 60 17.0 1.771e+01 -0.705246 1.6243 -0.434177
+#> ds 5 parent 60 18.7 1.771e+01 0.994754 1.6243 0.612409
+#> ds 5 parent 90 11.3 1.180e+01 -0.504856 1.2580 -0.401315
+#> ds 5 parent 90 11.9 1.180e+01 0.095144 1.2580 0.075631
+#> ds 5 parent 120 9.0 7.917e+00 1.083499 1.0571 1.024928
+#> ds 5 parent 120 8.1 7.917e+00 0.183499 1.0571 0.173579
+#> ds 5 m1 0 0.7 3.553e-15 0.700000 0.8588 0.815100
+#> ds 5 m1 1 3.0 3.204e+00 -0.204414 0.8943 -0.228572
+#> ds 5 m1 1 2.6 3.204e+00 -0.604414 0.8943 -0.675845
+#> ds 5 m1 3 5.1 8.586e+00 -3.485889 1.0884 -3.202858
+#> ds 5 m1 3 7.5 8.586e+00 -1.085889 1.0884 -0.997722
+#> ds 5 m1 7 16.5 1.612e+01 0.376855 1.5211 0.247743
+#> ds 5 m1 7 19.0 1.612e+01 2.876855 1.5211 1.891237
+#> ds 5 m1 14 22.9 2.267e+01 0.228264 1.9633 0.116267
+#> ds 5 m1 14 23.2 2.267e+01 0.528264 1.9633 0.269072
+#> ds 5 m1 28 22.2 2.468e+01 -2.480178 2.1050 -1.178211
+#> ds 5 m1 28 24.4 2.468e+01 -0.280178 2.1050 -0.133099
+#> ds 5 m1 60 15.5 1.860e+01 -3.099615 1.6838 -1.840794
+#> ds 5 m1 60 19.8 1.860e+01 1.200385 1.6838 0.712883
+#> ds 5 m1 90 14.9 1.326e+01 1.636345 1.3433 1.218195
+#> ds 5 m1 90 14.2 1.326e+01 0.936345 1.3433 0.697072
+#> ds 5 m1 120 10.9 9.348e+00 1.551535 1.1258 1.378133
+#> ds 5 m1 120 10.4 9.348e+00 1.051535 1.1258 0.934014</div><div class='input'><span class='co'># }</span>
</div></pre>
</div>
--
cgit v1.2.1
From 137612045c23198f10d6e8612c32e266c2a6c00e Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Thu, 29 Jul 2021 12:17:56 +0200
Subject: Go back to 1.0.x version, update docs
---
docs/dev/reference/summary.saem.mmkin.html | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index fdfdaf4b..aeb08d12 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -260,15 +260,15 @@ saemix authors for the parts inherited from saemix.</p>
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Fri Jun 11 10:58:28 2021"
+#> [1] "Thu Jul 29 12:15:32 2021"
#> ....
#> Minimisation finished
-#> [1] "Fri Jun 11 10:58:40 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+#> [1] "Thu Jul 29 12:15:44 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
#> mkin version used for pre-fitting: 1.0.5
#> R version used for fitting: 4.1.0
-#> Date of fit: Fri Jun 11 10:58:41 2021
-#> Date of summary: Fri Jun 11 10:58:41 2021
+#> Date of fit: Thu Jul 29 12:15:45 2021
+#> Date of summary: Thu Jul 29 12:15:45 2021
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -283,7 +283,7 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 12.75 s using 300, 100 iterations
+#> Fitted in 13.372 s using 300, 100 iterations
#>
#> Variance model: Two-component variance function
#>
--
cgit v1.2.1
From 51fab94230e926cec690dc455964bd797a97b7c7 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Wed, 4 Aug 2021 16:37:52 +0200
Subject: Improve AIC table in vignette
---
docs/dev/reference/summary.saem.mmkin.html | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index aeb08d12..08e3c8f8 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -260,15 +260,15 @@ saemix authors for the parts inherited from saemix.</p>
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Thu Jul 29 12:15:32 2021"
+#> [1] "Wed Aug 4 16:23:26 2021"
#> ....
#> Minimisation finished
-#> [1] "Thu Jul 29 12:15:44 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+#> [1] "Wed Aug 4 16:23:38 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
#> mkin version used for pre-fitting: 1.0.5
#> R version used for fitting: 4.1.0
-#> Date of fit: Thu Jul 29 12:15:45 2021
-#> Date of summary: Thu Jul 29 12:15:45 2021
+#> Date of fit: Wed Aug 4 16:23:39 2021
+#> Date of summary: Wed Aug 4 16:23:39 2021
#>
#> Equations:
#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
@@ -283,7 +283,7 @@ saemix authors for the parts inherited from saemix.</p>
#>
#> Model predictions using solution type analytical
#>
-#> Fitted in 13.372 s using 300, 100 iterations
+#> Fitted in 12.54 s using 300, 100 iterations
#>
#> Variance model: Two-component variance function
#>
--
cgit v1.2.1
From ff83d8b2ba623513d92ac90fac4a1b0ec98c2cb5 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 5 Oct 2021 17:33:52 +0200
Subject: Update docs
---
docs/dev/reference/summary.saem.mmkin.html | 270 +----------------------------
1 file changed, 3 insertions(+), 267 deletions(-)
(limited to 'docs/dev/reference/summary.saem.mmkin.html')
diff --git a/docs/dev/reference/summary.saem.mmkin.html b/docs/dev/reference/summary.saem.mmkin.html
index 08e3c8f8..fe537320 100644
--- a/docs/dev/reference/summary.saem.mmkin.html
+++ b/docs/dev/reference/summary.saem.mmkin.html
@@ -76,7 +76,7 @@ endpoints such as formation fractions and DT50 values. Optionally
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.0.5</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">1.1.0</span>
</span>
</div>
@@ -259,272 +259,8 @@ saemix authors for the parts inherited from saemix.</p>
<span class='va'>f_mmkin_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='mmkin.html'>mmkin</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span><span class='op'>(</span><span class='va'>dfop_sfo</span><span class='op'>)</span>, <span class='va'>ds_syn_dfop_sfo</span>,
quiet <span class='op'>=</span> <span class='cn'>TRUE</span>, error_model <span class='op'>=</span> <span class='st'>"tc"</span>, cores <span class='op'>=</span> <span class='fl'>5</span><span class='op'>)</span>
<span class='va'>f_saem_dfop_sfo</span> <span class='op'><-</span> <span class='fu'><a href='saem.html'>saem</a></span><span class='op'>(</span><span class='va'>f_mmkin_dfop_sfo</span><span class='op'>)</span>
-</div><div class='output co'>#> Running main SAEM algorithm
-#> [1] "Wed Aug 4 16:23:26 2021"
-#> ....
-#> Minimisation finished
-#> [1] "Wed Aug 4 16:23:38 2021"</div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-</div><div class='output co'>#> saemix version used for fitting: 3.1.9000
-#> mkin version used for pre-fitting: 1.0.5
-#> R version used for fitting: 4.1.0
-#> Date of fit: Wed Aug 4 16:23:39 2021
-#> Date of summary: Wed Aug 4 16:23:39 2021
-#>
-#> Equations:
-#> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
-#> time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
-#> * parent
-#> d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
-#> * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
-#> exp(-k2 * time))) * parent - k_m1 * m1
-#>
-#> Data:
-#> 171 observations of 2 variable(s) grouped in 5 datasets
-#>
-#> Model predictions using solution type analytical
-#>
-#> Fitted in 12.54 s using 300, 100 iterations
-#>
-#> Variance model: Two-component variance function
-#>
-#> Mean of starting values for individual parameters:
-#> parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
-#> 101.65645 -4.05368 -0.94311 -2.35943 -4.07006
-#> g_qlogis
-#> -0.01132
-#>
-#> Fixed degradation parameter values:
-#> None
-#>
-#> Results:
-#>
-#> Likelihood computed by importance sampling
-#> AIC BIC logLik
-#> 825.9 820.4 -398.9
-#>
-#> Optimised parameters:
-#> est. lower upper
-#> parent_0 101.118986 97.368 104.8695
-#> log_k_m1 -4.057591 -4.177 -3.9379
-#> f_parent_qlogis -0.933087 -1.290 -0.5763
-#> log_k1 -2.945520 -3.833 -2.0576
-#> log_k2 -3.531954 -4.310 -2.7542
-#> g_qlogis -0.009584 -1.688 1.6687
-#>
-#> Correlation:
-#> prnt_0 lg_k_1 f_prn_ log_k1 log_k2
-#> log_k_m1 -0.198
-#> f_parent_qlogis -0.153 0.184
-#> log_k1 0.080 -0.077 -0.045
-#> log_k2 0.005 0.008 -0.003 -0.019
-#> g_qlogis -0.059 0.048 0.041 -0.334 -0.253
-#>
-#> Random effects:
-#> est. lower upper
-#> SD.parent_0 2.97797 -0.62927 6.5852
-#> SD.log_k_m1 0.09235 -0.02448 0.2092
-#> SD.f_parent_qlogis 0.38712 0.13469 0.6396
-#> SD.log_k1 0.88671 0.27052 1.5029
-#> SD.log_k2 0.80497 0.25587 1.3541
-#> SD.g_qlogis 0.36812 -3.56188 4.2981
-#>
-#> Variance model:
-#> est. lower upper
-#> a.1 0.85879 0.68143 1.03615
-#> b.1 0.07787 0.06288 0.09286
-#>
-#> Backtransformed parameters:
-#> est. lower upper
-#> parent_0 101.11899 97.36850 104.86947
-#> k_m1 0.01729 0.01534 0.01949
-#> f_parent_to_m1 0.28230 0.21587 0.35979
-#> k1 0.05257 0.02163 0.12776
-#> k2 0.02925 0.01344 0.06366
-#> g 0.49760 0.15606 0.84140
-#>
-#> Resulting formation fractions:
-#> ff
-#> parent_m1 0.2823
-#> parent_sink 0.7177
-#>
-#> Estimated disappearance times:
-#> DT50 DT90 DT50back DT50_k1 DT50_k2
-#> parent 17.47 62.31 18.76 13.18 23.7
-#> m1 40.09 133.17 NA NA NA
-#>
-#> Data:
-#> ds name time observed predicted residual std standardized
-#> ds 1 parent 0 89.8 9.838e+01 -8.584661 7.7094 -1.113536
-#> ds 1 parent 0 104.1 9.838e+01 5.715339 7.7094 0.741350
-#> ds 1 parent 1 88.7 9.388e+01 -5.182489 7.3611 -0.704041
-#> ds 1 parent 1 95.5 9.388e+01 1.617511 7.3611 0.219739
-#> ds 1 parent 3 81.8 8.563e+01 -3.825382 6.7229 -0.569010
-#> ds 1 parent 3 94.5 8.563e+01 8.874618 6.7229 1.320062
-#> ds 1 parent 7 71.5 7.169e+01 -0.188290 5.6482 -0.033336
-#> ds 1 parent 7 70.3 7.169e+01 -1.388290 5.6482 -0.245795
-#> ds 1 parent 14 54.2 5.361e+01 0.586595 4.2624 0.137621
-#> ds 1 parent 14 49.6 5.361e+01 -4.013405 4.2624 -0.941587
-#> ds 1 parent 28 31.5 3.219e+01 -0.688936 2.6496 -0.260011
-#> ds 1 parent 28 28.8 3.219e+01 -3.388936 2.6496 -1.279016
-#> ds 1 parent 60 12.1 1.278e+01 -0.678998 1.3145 -0.516562
-#> ds 1 parent 60 13.6 1.278e+01 0.821002 1.3145 0.624595
-#> ds 1 parent 90 6.2 6.157e+00 0.043461 0.9835 0.044188
-#> ds 1 parent 90 8.3 6.157e+00 2.143461 0.9835 2.179316
-#> ds 1 parent 120 2.2 3.076e+00 -0.876218 0.8916 -0.982775
-#> ds 1 parent 120 2.4 3.076e+00 -0.676218 0.8916 -0.758453
-#> ds 1 m1 1 0.3 1.134e+00 -0.833749 0.8633 -0.965750
-#> ds 1 m1 1 0.2 1.134e+00 -0.933749 0.8633 -1.081583
-#> ds 1 m1 3 2.2 3.157e+00 -0.957400 0.8933 -1.071763
-#> ds 1 m1 3 3.0 3.157e+00 -0.157400 0.8933 -0.176202
-#> ds 1 m1 7 6.5 6.369e+00 0.130995 0.9917 0.132090
-#> ds 1 m1 7 5.0 6.369e+00 -1.369005 0.9917 -1.380438
-#> ds 1 m1 14 10.2 9.971e+00 0.229362 1.1577 0.198112
-#> ds 1 m1 14 9.5 9.971e+00 -0.470638 1.1577 -0.406513
-#> ds 1 m1 28 12.2 1.265e+01 -0.447735 1.3067 -0.342637
-#> ds 1 m1 28 13.4 1.265e+01 0.752265 1.3067 0.575683
-#> ds 1 m1 60 11.8 1.097e+01 0.832027 1.2112 0.686945
-#> ds 1 m1 60 13.2 1.097e+01 2.232027 1.2112 1.842825
-#> ds 1 m1 90 6.6 7.876e+00 -1.275985 1.0553 -1.209109
-#> ds 1 m1 90 9.3 7.876e+00 1.424015 1.0553 1.349381
-#> ds 1 m1 120 3.5 5.336e+00 -1.835829 0.9540 -1.924292
-#> ds 1 m1 120 5.4 5.336e+00 0.064171 0.9540 0.067263
-#> ds 2 parent 0 118.0 1.092e+02 8.812058 8.5459 1.031142
-#> ds 2 parent 0 99.8 1.092e+02 -9.387942 8.5459 -1.098529
-#> ds 2 parent 1 90.2 1.023e+02 -12.114268 8.0135 -1.511724
-#> ds 2 parent 1 94.6 1.023e+02 -7.714268 8.0135 -0.962654
-#> ds 2 parent 3 96.1 9.066e+01 5.436165 7.1122 0.764344
-#> ds 2 parent 3 78.4 9.066e+01 -12.263835 7.1122 -1.724339
-#> ds 2 parent 7 77.9 7.365e+01 4.245773 5.7995 0.732090
-#> ds 2 parent 7 77.7 7.365e+01 4.045773 5.7995 0.697604
-#> ds 2 parent 14 56.0 5.593e+01 0.073803 4.4389 0.016626
-#> ds 2 parent 14 54.7 5.593e+01 -1.226197 4.4389 -0.276236
-#> ds 2 parent 28 36.6 3.892e+01 -2.320837 3.1502 -0.736737
-#> ds 2 parent 28 36.8 3.892e+01 -2.120837 3.1502 -0.673248
-#> ds 2 parent 60 22.1 2.136e+01 0.741020 1.8719 0.395868
-#> ds 2 parent 60 24.7 2.136e+01 3.341020 1.8719 1.784841
-#> ds 2 parent 90 12.4 1.251e+01 -0.113999 1.2989 -0.087765
-#> ds 2 parent 90 10.8 1.251e+01 -1.713999 1.2989 -1.319575
-#> ds 2 parent 120 6.8 7.338e+00 -0.537708 1.0315 -0.521281
-#> ds 2 parent 120 7.9 7.338e+00 0.562292 1.0315 0.545113
-#> ds 2 m1 1 1.3 1.576e+00 -0.276176 0.8675 -0.318352
-#> ds 2 m1 3 3.7 4.177e+00 -0.476741 0.9183 -0.519146
-#> ds 2 m1 3 4.7 4.177e+00 0.523259 0.9183 0.569801
-#> ds 2 m1 7 8.1 7.724e+00 0.376365 1.0485 0.358970
-#> ds 2 m1 7 7.9 7.724e+00 0.176365 1.0485 0.168214
-#> ds 2 m1 14 10.1 1.077e+01 -0.674433 1.2006 -0.561738
-#> ds 2 m1 14 10.3 1.077e+01 -0.474433 1.2006 -0.395158
-#> ds 2 m1 28 10.7 1.212e+01 -1.416179 1.2758 -1.110010
-#> ds 2 m1 28 12.2 1.212e+01 0.083821 1.2758 0.065699
-#> ds 2 m1 60 10.7 1.041e+01 0.294930 1.1807 0.249793
-#> ds 2 m1 60 12.5 1.041e+01 2.094930 1.1807 1.774316
-#> ds 2 m1 90 9.1 8.079e+00 1.020859 1.0646 0.958929
-#> ds 2 m1 90 7.4 8.079e+00 -0.679141 1.0646 -0.637941
-#> ds 2 m1 120 6.1 5.968e+00 0.131673 0.9765 0.134843
-#> ds 2 m1 120 4.5 5.968e+00 -1.468327 0.9765 -1.503683
-#> ds 3 parent 0 106.2 1.036e+02 2.638248 8.1101 0.325303
-#> ds 3 parent 0 106.9 1.036e+02 3.338248 8.1101 0.411614
-#> ds 3 parent 1 107.4 9.580e+01 11.600063 7.5094 1.544743
-#> ds 3 parent 1 96.1 9.580e+01 0.300063 7.5094 0.039958
-#> ds 3 parent 3 79.4 8.297e+01 -3.574516 6.5182 -0.548391
-#> ds 3 parent 3 82.6 8.297e+01 -0.374516 6.5182 -0.057457
-#> ds 3 parent 7 63.9 6.517e+01 -1.272397 5.1472 -0.247200
-#> ds 3 parent 7 62.4 6.517e+01 -2.772397 5.1472 -0.538618
-#> ds 3 parent 14 51.0 4.821e+01 2.790075 3.8512 0.724475
-#> ds 3 parent 14 47.1 4.821e+01 -1.109925 3.8512 -0.288205
-#> ds 3 parent 28 36.1 3.385e+01 2.250573 2.7723 0.811811
-#> ds 3 parent 28 36.6 3.385e+01 2.750573 2.7723 0.992168
-#> ds 3 parent 60 20.1 1.964e+01 0.455700 1.7543 0.259760
-#> ds 3 parent 60 19.8 1.964e+01 0.155700 1.7543 0.088753
-#> ds 3 parent 90 11.3 1.210e+01 -0.795458 1.2746 -0.624068
-#> ds 3 parent 90 10.7 1.210e+01 -1.395458 1.2746 -1.094792
-#> ds 3 parent 120 8.2 7.451e+00 0.749141 1.0364 0.722816
-#> ds 3 parent 120 7.3 7.451e+00 -0.150859 1.0364 -0.145558
-#> ds 3 m1 0 0.8 3.695e-13 0.800000 0.8588 0.931542
-#> ds 3 m1 1 1.8 1.740e+00 0.059741 0.8694 0.068714
-#> ds 3 m1 1 2.3 1.740e+00 0.559741 0.8694 0.643812
-#> ds 3 m1 3 4.2 4.531e+00 -0.331379 0.9285 -0.356913
-#> ds 3 m1 3 4.1 4.531e+00 -0.431379 0.9285 -0.464618
-#> ds 3 m1 7 6.8 8.113e+00 -1.312762 1.0661 -1.231333
-#> ds 3 m1 7 10.1 8.113e+00 1.987238 1.0661 1.863971
-#> ds 3 m1 14 11.4 1.079e+01 0.613266 1.2013 0.510507
-#> ds 3 m1 14 12.8 1.079e+01 2.013266 1.2013 1.675923
-#> ds 3 m1 28 11.5 1.133e+01 0.174252 1.2310 0.141553
-#> ds 3 m1 28 10.6 1.133e+01 -0.725748 1.2310 -0.589558
-#> ds 3 m1 60 7.5 8.948e+00 -1.448281 1.1059 -1.309561
-#> ds 3 m1 60 8.6 8.948e+00 -0.348281 1.1059 -0.314922
-#> ds 3 m1 90 7.3 6.665e+00 0.634932 1.0034 0.632752
-#> ds 3 m1 90 8.1 6.665e+00 1.434932 1.0034 1.430004
-#> ds 3 m1 120 5.3 4.795e+00 0.504936 0.9365 0.539199
-#> ds 3 m1 120 3.8 4.795e+00 -0.995064 0.9365 -1.062586
-#> ds 4 parent 0 104.7 9.985e+01 4.850494 7.8227 0.620050
-#> ds 4 parent 0 88.3 9.985e+01 -11.549506 7.8227 -1.476402
-#> ds 4 parent 1 94.2 9.676e+01 -2.556304 7.5834 -0.337093
-#> ds 4 parent 1 94.6 9.676e+01 -2.156304 7.5834 -0.284346
-#> ds 4 parent 3 78.1 9.092e+01 -12.817485 7.1318 -1.797230
-#> ds 4 parent 3 96.5 9.092e+01 5.582515 7.1318 0.782764
-#> ds 4 parent 7 76.2 8.050e+01 -4.297338 6.3270 -0.679204
-#> ds 4 parent 7 77.8 8.050e+01 -2.697338 6.3270 -0.426320
-#> ds 4 parent 14 70.8 6.562e+01 5.179989 5.1816 0.999687
-#> ds 4 parent 14 67.3 6.562e+01 1.679989 5.1816 0.324222
-#> ds 4 parent 28 43.1 4.499e+01 -1.886936 3.6069 -0.523140
-#> ds 4 parent 28 45.1 4.499e+01 0.113064 3.6069 0.031346
-#> ds 4 parent 60 21.3 2.151e+01 -0.214840 1.8827 -0.114114
-#> ds 4 parent 60 23.5 2.151e+01 1.985160 1.8827 1.054433
-#> ds 4 parent 90 11.8 1.190e+01 -0.098528 1.2633 -0.077990
-#> ds 4 parent 90 12.1 1.190e+01 0.201472 1.2633 0.159475
-#> ds 4 parent 120 7.0 6.886e+00 0.113832 1.0125 0.112431
-#> ds 4 parent 120 6.2 6.886e+00 -0.686168 1.0125 -0.677724
-#> ds 4 m1 0 1.6 4.263e-14 1.600000 0.8588 1.863085
-#> ds 4 m1 1 0.9 7.140e-01 0.185984 0.8606 0.216112
-#> ds 4 m1 3 3.7 2.022e+00 1.678243 0.8731 1.922160
-#> ds 4 m1 3 2.0 2.022e+00 -0.021757 0.8731 -0.024919
-#> ds 4 m1 7 3.6 4.207e+00 -0.607229 0.9192 -0.660633
-#> ds 4 m1 7 3.8 4.207e+00 -0.407229 0.9192 -0.443044
-#> ds 4 m1 14 7.1 6.912e+00 0.188339 1.0135 0.185828
-#> ds 4 m1 14 6.6 6.912e+00 -0.311661 1.0135 -0.307506
-#> ds 4 m1 28 9.5 9.449e+00 0.050714 1.1309 0.044843
-#> ds 4 m1 28 9.3 9.449e+00 -0.149286 1.1309 -0.132004
-#> ds 4 m1 60 8.3 8.997e+00 -0.697403 1.1083 -0.629230
-#> ds 4 m1 60 9.0 8.997e+00 0.002597 1.1083 0.002343
-#> ds 4 m1 90 6.6 6.697e+00 -0.096928 1.0047 -0.096472
-#> ds 4 m1 90 7.7 6.697e+00 1.003072 1.0047 0.998348
-#> ds 4 m1 120 3.7 4.622e+00 -0.921607 0.9312 -0.989749
-#> ds 4 m1 120 3.5 4.622e+00 -1.121607 0.9312 -1.204537
-#> ds 5 parent 0 110.4 1.045e+02 5.942426 8.1795 0.726502
-#> ds 5 parent 0 112.1 1.045e+02 7.642426 8.1795 0.934338
-#> ds 5 parent 1 93.5 9.739e+01 -3.893915 7.6327 -0.510162
-#> ds 5 parent 1 91.0 9.739e+01 -6.393915 7.6327 -0.837700
-#> ds 5 parent 3 71.0 8.519e+01 -14.188275 6.6891 -2.121098
-#> ds 5 parent 3 89.7 8.519e+01 4.511725 6.6891 0.674487
-#> ds 5 parent 7 60.4 6.684e+01 -6.439546 5.2753 -1.220701
-#> ds 5 parent 7 59.1 6.684e+01 -7.739546 5.2753 -1.467133
-#> ds 5 parent 14 56.5 4.736e+01 9.138979 3.7868 2.413407
-#> ds 5 parent 14 47.0 4.736e+01 -0.361021 3.7868 -0.095338
-#> ds 5 parent 28 30.2 3.033e+01 -0.131178 2.5132 -0.052195
-#> ds 5 parent 28 23.9 3.033e+01 -6.431178 2.5132 -2.558936
-#> ds 5 parent 60 17.0 1.771e+01 -0.705246 1.6243 -0.434177
-#> ds 5 parent 60 18.7 1.771e+01 0.994754 1.6243 0.612409
-#> ds 5 parent 90 11.3 1.180e+01 -0.504856 1.2580 -0.401315
-#> ds 5 parent 90 11.9 1.180e+01 0.095144 1.2580 0.075631
-#> ds 5 parent 120 9.0 7.917e+00 1.083499 1.0571 1.024928
-#> ds 5 parent 120 8.1 7.917e+00 0.183499 1.0571 0.173579
-#> ds 5 m1 0 0.7 3.553e-15 0.700000 0.8588 0.815100
-#> ds 5 m1 1 3.0 3.204e+00 -0.204414 0.8943 -0.228572
-#> ds 5 m1 1 2.6 3.204e+00 -0.604414 0.8943 -0.675845
-#> ds 5 m1 3 5.1 8.586e+00 -3.485889 1.0884 -3.202858
-#> ds 5 m1 3 7.5 8.586e+00 -1.085889 1.0884 -0.997722
-#> ds 5 m1 7 16.5 1.612e+01 0.376855 1.5211 0.247743
-#> ds 5 m1 7 19.0 1.612e+01 2.876855 1.5211 1.891237
-#> ds 5 m1 14 22.9 2.267e+01 0.228264 1.9633 0.116267
-#> ds 5 m1 14 23.2 2.267e+01 0.528264 1.9633 0.269072
-#> ds 5 m1 28 22.2 2.468e+01 -2.480178 2.1050 -1.178211
-#> ds 5 m1 28 24.4 2.468e+01 -0.280178 2.1050 -0.133099
-#> ds 5 m1 60 15.5 1.860e+01 -3.099615 1.6838 -1.840794
-#> ds 5 m1 60 19.8 1.860e+01 1.200385 1.6838 0.712883
-#> ds 5 m1 90 14.9 1.326e+01 1.636345 1.3433 1.218195
-#> ds 5 m1 90 14.2 1.326e+01 0.936345 1.3433 0.697072
-#> ds 5 m1 120 10.9 9.348e+00 1.551535 1.1258 1.378133
-#> ds 5 m1 120 10.4 9.348e+00 1.051535 1.1258 0.934014</div><div class='input'><span class='co'># }</span>
+</div><div class='output co'>#> <span class='warning'>Warning: argument is not a function</span></div><div class='output co'>#> <span class='message'> </span></div><div class='output co'>#> <span class='error'>Error in rxModelVars_(obj): Not compatible with STRSXP: [type=NULL].</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/pkg/saemix/man/summary-methods.html'>summary</a></span><span class='op'>(</span><span class='va'>f_saem_dfop_sfo</span>, data <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
+</div><div class='output co'>#> <span class='error'>Error in h(simpleError(msg, call)): error in evaluating the argument 'object' in selecting a method for function 'summary': object 'f_saem_dfop_sfo' not found</span></div><div class='input'><span class='co'># }</span>
</div></pre>
</div>
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