From 004fce2520d6889d82226e21bc443426e81d93f2 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Mon, 17 Apr 2023 19:39:09 +0200 Subject: Improve docs of multistart method --- docs/dev/reference/Rplot001.png | Bin 13993 -> 20512 bytes docs/dev/reference/Rplot002.png | Bin 13470 -> 16766 bytes docs/dev/reference/index.html | 5 ----- docs/dev/reference/mkinpredict.html | 9 +++++---- docs/dev/reference/multistart-1.png | Bin 66388 -> 63843 bytes docs/dev/reference/multistart-2.png | Bin 56780 -> 52220 bytes docs/dev/reference/multistart.html | 10 ++++------ 7 files changed, 9 insertions(+), 15 deletions(-) (limited to 'docs/dev/reference') diff --git a/docs/dev/reference/Rplot001.png b/docs/dev/reference/Rplot001.png index 5de2bdc7..278fd2e2 100644 Binary files a/docs/dev/reference/Rplot001.png and b/docs/dev/reference/Rplot001.png differ diff --git a/docs/dev/reference/Rplot002.png b/docs/dev/reference/Rplot002.png index 556ca0a7..4b646f22 100644 Binary files a/docs/dev/reference/Rplot002.png and b/docs/dev/reference/Rplot002.png differ diff --git a/docs/dev/reference/index.html b/docs/dev/reference/index.html index 84bbbdc4..85dc7c6e 100644 --- a/docs/dev/reference/index.html +++ b/docs/dev/reference/index.html @@ -81,11 +81,6 @@
  • Example evaluation of NAFTA SOP Attachment examples
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  • News diff --git a/docs/dev/reference/mkinpredict.html b/docs/dev/reference/mkinpredict.html index 01c15a19..7d8e7c26 100644 --- a/docs/dev/reference/mkinpredict.html +++ b/docs/dev/reference/mkinpredict.html @@ -394,11 +394,12 @@ as these always return mapped output.

    c(parent = 100, m1 = 0), seq(0, 20, by = 0.1), solution_type = "analytical", use_compiled = FALSE)[201,]) } +#> Loading required package: rbenchmark #> test relative elapsed -#> 2 deSolve_compiled 1.0 0.002 -#> 4 analytical 1.0 0.002 -#> 1 eigen 4.0 0.008 -#> 3 deSolve 30.5 0.061 +#> 2 deSolve_compiled 1.00 0.004 +#> 1 eigen 4.00 0.016 +#> 4 analytical 4.25 0.017 +#> 3 deSolve 40.75 0.163 # \dontrun{ # Predict from a fitted model diff --git a/docs/dev/reference/multistart-1.png b/docs/dev/reference/multistart-1.png index c7937d67..ee0306d6 100644 Binary files a/docs/dev/reference/multistart-1.png and b/docs/dev/reference/multistart-1.png differ diff --git a/docs/dev/reference/multistart-2.png b/docs/dev/reference/multistart-2.png index e1983f12..69a178e3 100644 Binary files a/docs/dev/reference/multistart-2.png and b/docs/dev/reference/multistart-2.png differ diff --git a/docs/dev/reference/multistart.html b/docs/dev/reference/multistart.html index 3cdede7b..36767560 100644 --- a/docs/dev/reference/multistart.html +++ b/docs/dev/reference/multistart.html @@ -222,15 +222,13 @@ doi: 10.1186/s12859-021-04373-4.

    f_saem_reduced <- update(f_saem_full, no_random_effect = "log_k2") illparms(f_saem_reduced) -# On Windows, we need to create a cluster first. When working with -# such a cluster, we need to export the mmkin object to the cluster -# nodes, as it is referred to when updating the saem object on the nodes. +# On Windows, we need to create a PSOCK cluster first and refer to it +# in the call to multistart() library(parallel) cl <- makePSOCKcluster(12) f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cluster = cl) -#> Error in checkForRemoteErrors(val): 16 nodes produced errors; first error: unused argument (mc.preschedule = FALSE) -parplot(f_saem_reduced_multi, lpos = "topright") -#> Error in parplot(f_saem_reduced_multi, lpos = "topright"): object 'f_saem_reduced_multi' not found +parplot(f_saem_reduced_multi, lpos = "topright", ylim = c(0.5, 2)) + stopCluster(cl) # } -- cgit v1.2.1