From 08e600c0eea6153b433659c08ea49aead5ffd932 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 26 Oct 2022 10:36:19 +0200 Subject: Update multistart example code and vignette --- docs/dev/reference/Rplot001.png | Bin 1011 -> 19755 bytes docs/dev/reference/Rplot002.png | Bin 17010 -> 17365 bytes docs/dev/reference/multistart-1.png | Bin 59254 -> 59284 bytes docs/dev/reference/multistart-2.png | Bin 54149 -> 54871 bytes docs/dev/reference/multistart.html | 12 ++---------- 5 files changed, 2 insertions(+), 10 deletions(-) (limited to 'docs/dev/reference') diff --git a/docs/dev/reference/Rplot001.png b/docs/dev/reference/Rplot001.png index 17a35806..f7b4238e 100644 Binary files a/docs/dev/reference/Rplot001.png and b/docs/dev/reference/Rplot001.png differ diff --git a/docs/dev/reference/Rplot002.png b/docs/dev/reference/Rplot002.png index f06a860e..018559d0 100644 Binary files a/docs/dev/reference/Rplot002.png and b/docs/dev/reference/Rplot002.png differ diff --git a/docs/dev/reference/multistart-1.png b/docs/dev/reference/multistart-1.png index ee9c1b5a..25362568 100644 Binary files a/docs/dev/reference/multistart-1.png and b/docs/dev/reference/multistart-1.png differ diff --git a/docs/dev/reference/multistart-2.png b/docs/dev/reference/multistart-2.png index e54938ab..cf8c097e 100644 Binary files a/docs/dev/reference/multistart-2.png and b/docs/dev/reference/multistart-2.png differ diff --git a/docs/dev/reference/multistart.html b/docs/dev/reference/multistart.html index 83af8dbb..c874bf50 100644 --- a/docs/dev/reference/multistart.html +++ b/docs/dev/reference/multistart.html @@ -165,14 +165,6 @@ for parallel execution.

The index of the object with the highest likelihood

- -
-

Details

-

In case the online version of this help page contains error messages -in the example code and no plots, this is due to the multistart method -not working when called by pkgdown. Please refer to the -online vignette -in this case.

References

@@ -203,7 +195,7 @@ doi: 10.1186/s12859-021-04373-4.

f_mmkin <- mmkin("DFOP", dmta_ds, error_model = "tc", cores = 7, quiet = TRUE) f_saem_full <- saem(f_mmkin) f_saem_full_multi <- multistart(f_saem_full, n = 16, cores = 16) -parhist(f_saem_full_multi, lpos = "bottomright") +parhist(f_saem_full_multi, lpos = "bottomleft") illparms(f_saem_full) #> [1] "sd(log_k2)" @@ -219,7 +211,7 @@ doi: 10.1186/s12859-021-04373-4.

clusterExport(cl, "f_mmkin") #> Error in get(name, envir = envir): object 'f_mmkin' not found f_saem_reduced_multi <- multistart(f_saem_reduced, n = 16, cluster = cl) -parhist(f_saem_reduced_multi, lpos = "bottomright") +parhist(f_saem_reduced_multi, lpos = "topright") # }
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