From 679cf716192cdfd91dfd232578cbd4e30d7eac12 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 15 Nov 2022 08:01:52 +0100 Subject: Import saemix for easier profiling, update online docs --- docs/dev/reference/Rplot001.png | Bin 1011 -> 22432 bytes docs/dev/reference/logLik.saem.mmkin.html | 5 ++++- docs/dev/reference/mkinpredict.html | 13 ++++++++----- docs/dev/reference/saem.html | 11 +++++++---- 4 files changed, 19 insertions(+), 10 deletions(-) (limited to 'docs/dev/reference') diff --git a/docs/dev/reference/Rplot001.png b/docs/dev/reference/Rplot001.png index 17a35806..b3448db0 100644 Binary files a/docs/dev/reference/Rplot001.png and b/docs/dev/reference/Rplot001.png differ diff --git a/docs/dev/reference/logLik.saem.mmkin.html b/docs/dev/reference/logLik.saem.mmkin.html index b1ea22ef..ebef3b10 100644 --- a/docs/dev/reference/logLik.saem.mmkin.html +++ b/docs/dev/reference/logLik.saem.mmkin.html @@ -59,7 +59,10 @@ Example evaluation of NAFTA SOP Attachment examples
  • - Some benchmark timings + Benchmark timings for mkin +
    • +
  • + Benchmark timings for saem.mmkin
  • diff --git a/docs/dev/reference/mkinpredict.html b/docs/dev/reference/mkinpredict.html index 14f2b75b..37930912 100644 --- a/docs/dev/reference/mkinpredict.html +++ b/docs/dev/reference/mkinpredict.html @@ -61,7 +61,10 @@ kinetic parameters and initial values for the state variables.">Example evaluation of NAFTA SOP Attachment examples
  • - Some benchmark timings + Benchmark timings for mkin +
    • +
  • + Benchmark timings for saem.mmkin
  • @@ -371,10 +374,10 @@ as these always return mapped output.

    } #> Loading required package: rbenchmark #> test relative elapsed -#> 2 deSolve_compiled 1.00 0.004 -#> 4 analytical 5.25 0.021 -#> 1 eigen 6.00 0.024 -#> 3 deSolve 52.50 0.210 +#> 2 deSolve_compiled 1.0 0.005 +#> 1 eigen 4.2 0.021 +#> 4 analytical 4.2 0.021 +#> 3 deSolve 40.8 0.204 # \dontrun{ # Predict from a fitted model diff --git a/docs/dev/reference/saem.html b/docs/dev/reference/saem.html index 968dc68c..73382cba 100644 --- a/docs/dev/reference/saem.html +++ b/docs/dev/reference/saem.html @@ -61,7 +61,10 @@ Expectation Maximisation algorithm (SAEM).">Example evaluation of NAFTA SOP Attachment examples
  • - Some benchmark timings + Benchmark timings for mkin +
    • +
  • + Benchmark timings for saem.mmkin
  • @@ -429,8 +432,8 @@ using mmkin.

    #> saemix version used for fitting: 3.2 #> mkin version used for pre-fitting: 1.2.0 #> R version used for fitting: 4.2.2 -#> Date of fit: Mon Nov 14 21:06:30 2022 -#> Date of summary: Mon Nov 14 21:06:30 2022 +#> Date of fit: Tue Nov 15 00:45:58 2022 +#> Date of summary: Tue Nov 15 00:45:58 2022 #> #> Equations: #> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 * @@ -445,7 +448,7 @@ using mmkin.

    #> #> Model predictions using solution type analytical #> -#> Fitted in 9.625 s +#> Fitted in 9.189 s #> Using 300, 100 iterations and 10 chains #> #> Variance model: Constant variance -- cgit v1.2.1