From 7c62da1269e8910a210ba1917d4dc62d186d5606 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 6 Oct 2016 09:40:35 +0200 Subject: Static documentation rebuilt by pkgdown::build_site() --- docs/mmkin.html | 172 -------------------------------------------------------- 1 file changed, 172 deletions(-) delete mode 100644 docs/mmkin.html (limited to 'docs/mmkin.html') diff --git a/docs/mmkin.html b/docs/mmkin.html deleted file mode 100644 index 5924d3d5..00000000 --- a/docs/mmkin.html +++ /dev/null @@ -1,172 +0,0 @@ - - - - -mmkin. mkin 0.9.44.9000 - - - - - - - - - - - - - - - -
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- mkin 0.9.44.9000 -
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- Fit one or more kinetic models with one or more state variables to one or more datasets -

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Usage

- 
mmkin(models, datasets,
-      cores = round(detectCores()/2), cluster = NULL, ...)
- -

Arguments

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-
models
-
- Either a character vector of shorthand names ("SFO", "FOMC", "DFOP", - "HS", "SFORB"), or an optionally named list of mkinmod - objects. -
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datasets
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- An optionally named list of datasets suitable as observed data for - mkinfit. -
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cores
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- The number of cores to be used for multicore processing. This is only - used when the cluster argument is NULL. -
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cluster
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- A cluster as returned by makeCluster to be used for parallel - execution. -
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...
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- Further arguments that will be passed to mkinfit. -
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Description

- -

This function calls mkinfit on all combinations of models and datasets - specified in its first two arguments.

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Value

- -

- A matrix of mkinfit objects that can be indexed using the model - and dataset names as row and column indices. -

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Examples

- 
## Not run: ------------------------------------
-# m_synth_SFO_lin <- mkinmod(parent = mkinsub("SFO", "M1"),
-#                            M1 = mkinsub("SFO", "M2"),
-#                            M2 = mkinsub("SFO"), use_of_ff = "max")
-# 
-# m_synth_FOMC_lin <- mkinmod(parent = mkinsub("FOMC", "M1"),
-#                             M1 = mkinsub("SFO", "M2"),
-#                             M2 = mkinsub("SFO"), use_of_ff = "max")
-# 
-# models <- list(SFO_lin = m_synth_SFO_lin, FOMC_lin = m_synth_FOMC_lin)
-# datasets <- lapply(synthetic_data_for_UBA_2014[1:3], function(x) x$data)
-# names(datasets) <- paste("Dataset", 1:3)
-# 
-# time_default <- system.time(fits.0 <- mmkin(models, datasets))
-# time_1 <- system.time(fits.1 <- mmkin(models, datasets, cores = 1))
-# 
-# time_default
-# time_1
-# 
-# endpoints(fits[["SFO_lin", 2]])
-# 
-# # Plot.mkinfit handles rows or columns of mmkin result objects
-# plot(fits.0[1, ])
-# plot(fits.0[1, ], obs_var = c("M1", "M2"))
-# plot(fits.0[, 1])
-# # Use double brackets to extract a single mkinfit object, which will be plotted
-# # by plot.mkinfit
-# plot(fits.0[[1, 1]], sep_obs = TRUE, show_residuals = TRUE, show_errmin = TRUE)
-# # Plotting with mmkin (single brackets, extracting an mmkin object) does not
-# # allow to plot the observed variables separately
-# plot(fits.0[1, 1])
-## ---------------------------------------------
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See also

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[.mmkin for subsetting, plot.mmkin for plotting.

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Author

- - Johannes Ranke - - -
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- - \ No newline at end of file -- cgit v1.2.1