From 194659fcaccdd1ee37851725b8c72e99daa3a8cf Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Wed, 10 Apr 2019 10:17:35 +0200
Subject: Adapt tests, vignettes and examples

- Write the NEWS
- Static documentation rebuilt by pkgdown
- Adapt mkinerrmin
- Fix (hopefully all) remaining problems in mkinfit
---
 docs/news/index.html | 20 ++++++++++++++++++--
 1 file changed, 18 insertions(+), 2 deletions(-)

(limited to 'docs/news/index.html')

diff --git a/docs/news/index.html b/docs/news/index.html
index cb56adf5..aad50dce 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -60,7 +60,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.48.1</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.4</span>
       </span>
     </div>
 
@@ -122,9 +122,24 @@
       
     </div>
 
+    <div id="mkin-0-9-49-4-2019-04-09" class="section level1">
+<h1 class="page-header">
+<a href="#mkin-0-9-49-4-2019-04-09" class="anchor"></a>mkin 0.9.49.4 (2019-04-09)<small> Unreleased </small>
+</h1>
+<ul>
+<li><p>Direct minimization of the negative log-likelihood for non-constant error models (two-component and variance by variable). In the case the error model is constant variance, least squares is used as this is more stable</p></li>
+<li><p>The argument ‘reweight.method’ to mkinfit and mmkin is now obsolete, use ‘error_model’ instead</p></li>
+<li><p>Remove dependency on FME, only use nlminb for optimisation</p></li>
+<li><p>Use the numDeriv package to calculate hessians</p></li>
+<li><p>Add a benchmark vignette to document the impact on performance. For very simple fits, the new code is a bit slower, presumably because of the time it takes to calculate the hessian matrices with and without parameter transformation</p></li>
+<li><p>The code for manual weighting was removed</p></li>
+<li><p>The fitting time reported in the summary now includes the calculation of the hessians</p></li>
+<li><p>Adapt tests</p></li>
+</ul>
+</div>
     <div id="mkin-0-9-48-1-2019-03-04" class="section level1">
 <h1 class="page-header">
-<a href="#mkin-0-9-48-1-2019-03-04" class="anchor"></a>mkin 0.9.48.1 (2019-03-04)<small> Unreleased </small>
+<a href="#mkin-0-9-48-1-2019-03-04" class="anchor"></a>mkin 0.9.48.1 (2019-03-04)<small> 2019-03-04 </small>
 </h1>
 <ul>
 <li><p>Add the function ‘logLik.mkinfit’ which makes it possible to calculate an AIC for mkinfit objects</p></li>
@@ -680,6 +695,7 @@
     <div id="tocnav">
       <h2>Contents</h2>
       <ul class="nav nav-pills nav-stacked">
+        <li><a href="#mkin-0-9-49-4-2019-04-09">0.9.49.4</a></li>
         <li><a href="#mkin-0-9-48-1-2019-03-04">0.9.48.1</a></li>
         <li><a href="#mkin-0-9-47-5-2018-09-14">0.9.47.5</a></li>
         <li><a href="#mkin-0-9-47-3">0.9.47.3</a></li>
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