From 7c62da1269e8910a210ba1917d4dc62d186d5606 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 6 Oct 2016 09:40:35 +0200 Subject: Static documentation rebuilt by pkgdown::build_site() --- docs/reference.html | 288 ---------------------------------------------------- 1 file changed, 288 deletions(-) delete mode 100644 docs/reference.html (limited to 'docs/reference.html') diff --git a/docs/reference.html b/docs/reference.html deleted file mode 100644 index df1bd9a8..00000000 --- a/docs/reference.html +++ /dev/null @@ -1,288 +0,0 @@ - - - - -Function reference. mkin 0.9.44.9000 - - - - - - - - - - - - - - - -
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Function reference

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Main functions

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Essential functionality

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  • - mkinmod
    - Function to set up a kinetic model with one or more state variables -
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  • - mkinfit
    - Fit a kinetic model to data with one or more state variables -
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  • - mmkin
    - Fit one or more kinetic models with one or more state variables to one or more datasets -
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Show results

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Functions working on mkinfit objects

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  • - plot.mkinfit(plot_sep)
    - Plot the observed data and the fitted model of an mkinfit object -
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  • - summary.mkinfit(print.summary.mkinfit)
    - Summary method for class "mkinfit" -
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  • - mkinresplot
    - Function to plot residuals stored in an mkin object -
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  • - mkinparplot
    - Function to plot the confidence intervals obtained using - mkinfit -
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  • - endpoints
    -Function to calculate endpoints for further use from kinetic models fitted with mkinfit -
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  • - mkinerrmin
    -Calculate the minimum error to assume in order to pass the variance test -
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Work with mmkin objects

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Functions working with aggregated results

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  • - [.mmkin
    Subsetting method for mmkin objects
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  • - plot.mmkin
    - Plot model fits (observed and fitted) and the residuals for a row or column of an mmkin object -
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Datasets and known results

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Helper functions

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  • - mkin_wide_to_long
    - Convert a dataframe with observations over time into long format -
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  • - mkin_long_to_wide
    - Convert a dataframe from long to wide format -
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  • - mkinsub
    - Function to set up a kinetic submodel for one state variable -
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  • - mkinds
    A dataset class for mkin
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  • - print.mkinds
    - Print mkinds objects -
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  • - print.mkinmod
    - Print mkinmod objects -
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  • - mkinpredict
    - Produce predictions from a kinetic model using specific parameters -
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  • - transform_odeparms(backtransform_odeparms)
    - Functions to transform and backtransform kinetic parameters for fitting -
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  • - ilr(invilr)
    - Function to perform isometric log-ratio transformation -
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  • - geometric_mean
    Calculate the geometric mean
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Analytical solutions

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Parent only model solutions

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Deprecated functions

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Functions that have been superseeded

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  • - mkinplot
    - Plot the observed data and the fitted model of an mkinfit object -
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Other

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  • - add_err
    - Add normally distributed errors to simulated kinetic degradation data -
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