From e5d1df9a9b1f0951d7dfbaf24eee4294470b73e2 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 17 Nov 2022 14:54:20 +0100 Subject: Complete update of online docs for v1.2.0 --- docs/reference/Extract.mmkin.html | 55 +++++++++++++++++++++++++-------------- 1 file changed, 36 insertions(+), 19 deletions(-) (limited to 'docs/reference/Extract.mmkin.html') diff --git a/docs/reference/Extract.mmkin.html b/docs/reference/Extract.mmkin.html index e00391e8..1f528615 100644 --- a/docs/reference/Extract.mmkin.html +++ b/docs/reference/Extract.mmkin.html @@ -17,7 +17,7 @@ mkin - 1.1.0 + 1.2.0 @@ -44,11 +44,14 @@ Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models
  • - Example evaluation of FOCUS Example Dataset Z + Short demo of the multistart method
  • Performance benefit by using compiled model definitions in mkin
    • +
  • + Example evaluation of FOCUS Example Dataset Z +
  • Calculation of time weighted average concentrations with mkin
    • @@ -56,7 +59,10 @@ Example evaluation of NAFTA SOP Attachment examples
  • - Some benchmark timings + Benchmark timings for mkin +
    • +
  • + Benchmark timings for saem.mmkin
  • @@ -95,19 +101,30 @@

    Arguments

    x

    An mmkin object

    + +
    i

    Row index selecting the fits for specific models

    + +
    j

    Column index selecting the fits to specific datasets

    + +
    ...

    Not used, only there to satisfy the generic method definition

    + +
    drop

    If FALSE, the method always returns an mmkin object, otherwise either a list of mkinfit objects or a single mkinfit object.

    +

    Value

    -

    An object of class mmkin.

    + + +

    An object of class mmkin.

    Author

    @@ -116,11 +133,11 @@ either a list of mkinfit objects or a single mkinfit object.

    Examples

    - 
    
-  # Only use one core, to pass R CMD check --as-cran
-  fits <- mmkin(c("SFO", "FOMC"), list(B = FOCUS_2006_B, C = FOCUS_2006_C),
-                cores = 1, quiet = TRUE)
-  fits["FOMC", ]
+    
    
+  # Only use one core, to pass R CMD check --as-cran
+  fits <- mmkin(c("SFO", "FOMC"), list(B = FOCUS_2006_B, C = FOCUS_2006_C),
+                cores = 1, quiet = TRUE)
+  fits["FOMC", ]
 #> <mmkin> object
 #> Status of individual fits:
 #> 
@@ -129,7 +146,7 @@ either a list of mkinfit objects or a single mkinfit object.
    
 #>   FOMC OK OK
 #> 
 #> OK: No warnings
-  fits[, "B"]
+  fits[, "B"]
 #> <mmkin> object
 #> Status of individual fits:
 #> 
@@ -139,7 +156,7 @@ either a list of mkinfit objects or a single mkinfit object.
    
 #>   FOMC OK
 #> 
 #> OK: No warnings
-  fits["SFO", "B"]
+  fits["SFO", "B"]
 #> <mmkin> object
 #> Status of individual fits:
 #> 
@@ -148,14 +165,14 @@ either a list of mkinfit objects or a single mkinfit object.
    
 #>   SFO OK
 #> 
 #> OK: No warnings
-
-  head(
-    # This extracts an mkinfit object with lots of components
-    fits[["FOMC", "B"]]
-  )
+
+  head(
+    # This extracts an mkinfit object with lots of components
+    fits[["FOMC", "B"]]
+  )
 #> $par
 #>  parent_0 log_alpha  log_beta     sigma 
-#> 99.666193  2.549849  5.050586  1.890202 
+#> 99.666192  2.549850  5.050586  1.890202 
 #> 
 #> $objective
 #> [1] 28.58291
@@ -168,7 +185,7 @@ either a list of mkinfit objects or a single mkinfit object.
    
 #> 
 #> $evaluations
 #> function gradient 
-#>       25       72 
+#>       25       78 
 #> 
 #> $message
 #> [1] "both X-convergence and relative convergence (5)"
@@ -187,7 +204,7 @@ either a list of mkinfit objects or a single mkinfit object.
    
 
    
 
 
    
-  
    Site built with pkgdown 2.0.3.
    
+  
    Site built with pkgdown 2.0.6.
    -- cgit v1.2.1