From 2bb59c88d49b193f278916ad9cc4de83c0de9604 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 2 Mar 2022 18:03:54 +0100 Subject: Make tests more platform independent, update docs --- docs/reference/NAFTA_SOP_2015.html | 237 +++++++++++++++---------------------- 1 file changed, 93 insertions(+), 144 deletions(-) (limited to 'docs/reference/NAFTA_SOP_2015.html') diff --git a/docs/reference/NAFTA_SOP_2015.html b/docs/reference/NAFTA_SOP_2015.html index de9db9eb..1862580b 100644 --- a/docs/reference/NAFTA_SOP_2015.html +++ b/docs/reference/NAFTA_SOP_2015.html @@ -1,67 +1,12 @@ - - - - - - - -Example datasets from the NAFTA SOP published 2015 — NAFTA_SOP_2015 • mkin - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Example datasets from the NAFTA SOP published 2015 — NAFTA_SOP_2015 • mkin - - - - + + -
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Example datasets from the NAFTA SOP published 2015

@@ -147,97 +86,107 @@

Data taken from US EPA (2015), p. 19 and 23.

- 
NAFTA_SOP_Appendix_B
-  NAFTA_SOP_Appendix_D
- +
+ 
NAFTA_SOP_Appendix_B
+  NAFTA_SOP_Appendix_D
+
-

Format

+
+

Format

+

2 datasets with observations on the following variables.

name
+

a factor containing the name of the observed variable

-

2 datasets with observations on the following variables.

-
name

a factor containing the name of the observed variable

-
time

a numeric vector containing time points

-
value

a numeric vector containing concentrations

- -
+
time
+

a numeric vector containing time points

-

Source

+
value
+

a numeric vector containing concentrations

+ +
+
+

Source

NAFTA (2011) Guidance for evaluating and calculating degradation kinetics in environmental media. NAFTA Technical Working Group on Pesticides - https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation + https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/guidance-evaluating-and-calculating-degradation accessed 2019-02-22

US EPA (2015) Standard Operating Procedure for Using the NAFTA Guidance to Calculate Representative Half-life Values and Characterizing Pesticide Degradation - https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance

- -

Examples

- 
  nafta_evaluation <- nafta(NAFTA_SOP_Appendix_D, cores = 1)
-
#> The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
#> The representative half-life of the IORE model is longer than the one corresponding
#> to the terminal degradation rate found with the DFOP model.
#> The representative half-life obtained from the DFOP model may be used
  print(nafta_evaluation)
-
#> Sums of squares:
-#>       SFO      IORE      DFOP 
-#> 1378.6832  615.7730  517.8836 
-#> 
-#> Critical sum of squares for checking the SFO model:
-#> [1] 717.4598
-#> 
-#> Parameters:
-#> $SFO
-#>          Estimate   Pr(>t)    Lower   Upper
-#> parent_0  83.7558 1.80e-14 77.18268 90.3288
-#> k_parent   0.0017 7.43e-05  0.00112  0.0026
-#> sigma      8.7518 1.22e-05  5.64278 11.8608
-#> 
-#> $IORE
-#>                Estimate Pr(>t)    Lower    Upper
-#> parent_0       9.69e+01     NA 8.88e+01 1.05e+02
-#> k__iore_parent 8.40e-14     NA 1.79e-18 3.94e-09
-#> N_parent       6.68e+00     NA 4.19e+00 9.17e+00
-#> sigma          5.85e+00     NA 3.76e+00 7.94e+00
-#> 
-#> $DFOP
-#>          Estimate   Pr(>t)    Lower    Upper
-#> parent_0 9.76e+01 1.94e-13 9.02e+01 1.05e+02
-#> k1       4.24e-02 5.92e-03 2.03e-02 8.88e-02
-#> k2       8.24e-04 6.48e-03 3.89e-04 1.75e-03
-#> g        2.88e-01 2.47e-05 1.95e-01 4.03e-01
-#> sigma    5.36e+00 2.22e-05 3.43e+00 7.30e+00
-#> 
-#> 
-#> DTx values:
-#>      DT50    DT90 DT50_rep
-#> SFO   407    1350      407
-#> IORE  541 5190000  1560000
-#> DFOP  429    2380      841
-#> 
-#> Representative half-life:
-#> [1] 841.41
  plot(nafta_evaluation)
-
+ https://www.epa.gov/pesticide-science-and-assessing-pesticide-risks/standard-operating-procedure-using-nafta-guidance

+
+ +
+

Examples

+ 
  nafta_evaluation <- nafta(NAFTA_SOP_Appendix_D, cores = 1)
+#> The SFO model is rejected as S_SFO is equal or higher than the critical value S_c
+#> The representative half-life of the IORE model is longer than the one corresponding
+#> to the terminal degradation rate found with the DFOP model.
+#> The representative half-life obtained from the DFOP model may be used
+  print(nafta_evaluation)
+#> Sums of squares:
+#>       SFO      IORE      DFOP 
+#> 1378.6832  615.7730  517.8836 
+#> 
+#> Critical sum of squares for checking the SFO model:
+#> [1] 717.4598
+#> 
+#> Parameters:
+#> $SFO
+#>          Estimate   Pr(>t)    Lower   Upper
+#> parent_0  83.7558 1.80e-14 77.18268 90.3288
+#> k_parent   0.0017 7.43e-05  0.00112  0.0026
+#> sigma      8.7518 1.22e-05  5.64278 11.8608
+#> 
+#> $IORE
+#>                Estimate Pr(>t)    Lower    Upper
+#> parent_0       9.69e+01     NA 8.88e+01 1.05e+02
+#> k__iore_parent 8.40e-14     NA 1.79e-18 3.94e-09
+#> N_parent       6.68e+00     NA 4.19e+00 9.17e+00
+#> sigma          5.85e+00     NA 3.76e+00 7.94e+00
+#> 
+#> $DFOP
+#>          Estimate   Pr(>t)    Lower    Upper
+#> parent_0 9.76e+01 1.94e-13 9.02e+01 1.05e+02
+#> k1       4.24e-02 5.92e-03 2.03e-02 8.88e-02
+#> k2       8.24e-04 6.48e-03 3.89e-04 1.75e-03
+#> g        2.88e-01 2.47e-05 1.95e-01 4.03e-01
+#> sigma    5.36e+00 2.22e-05 3.43e+00 7.30e+00
+#> 
+#> 
+#> DTx values:
+#>      DT50    DT90 DT50_rep
+#> SFO   407    1350      407
+#> IORE  541 5190000  1560000
+#> DFOP  429    2380      841
+#> 
+#> Representative half-life:
+#> [1] 841.41
+  plot(nafta_evaluation)
+
+
+
+
-
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