From 6211f3ef4995657798686d8d4ab43ed9406e8a08 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 12 May 2020 16:34:00 +0200 Subject: Update vignettes and docs --- docs/reference/confint.mkinfit.html | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) (limited to 'docs/reference/confint.mkinfit.html') diff --git a/docs/reference/confint.mkinfit.html b/docs/reference/confint.mkinfit.html index 7658a572..190494bc 100644 --- a/docs/reference/confint.mkinfit.html +++ b/docs/reference/confint.mkinfit.html @@ -79,7 +79,7 @@ method of Venzon and Moolgavkar (1988)." /> mkin - 0.9.50.1 + 0.9.50.2 @@ -271,12 +271,12 @@ Profile-Likelihood Based Confidence Intervals, Applied Statistics, 37, use_of_ff = "max", quiet = TRUE) f_d_1 <- mkinfit(SFO_SFO, subset(FOCUS_2006_D, value != 0), quiet = TRUE) system.time(ci_profile <- confint(f_d_1, method = "profile", cores = 1, quiet = TRUE))
#> User System verstrichen -#> 3.362 0.000 3.364
# Using more cores does not save much time here, as parent_0 takes up most of the time +#> 3.410 0.000 3.412
# Using more cores does not save much time here, as parent_0 takes up most of the time # If we additionally exclude parent_0 (the confidence of which is often of # minor interest), we get a nice performance improvement from about 50 # seconds to about 12 seconds if we use at least four cores system.time(ci_profile_no_parent_0 <- confint(f_d_1, method = "profile", - c("k_parent_sink", "k_parent_m1", "k_m1_sink", "sigma"), cores = n_cores))
#> Profiling the likelihood
#> Warning: scheduled cores 1, 2, 3 encountered errors in user code, all values of the jobs will be affected
#> Error in dimnames(x) <- dn: Länge von 'dimnames' [2] ungleich der Arrayausdehnung
#> Timing stopped at: 0.011 0.045 0.201
ci_profile
#> 2.5% 97.5% + c("k_parent_sink", "k_parent_m1", "k_m1_sink", "sigma"), cores = n_cores))
#> Profiling the likelihood
#> Warning: scheduled cores 1, 2, 3 encountered errors in user code, all values of the jobs will be affected
#> Error in dimnames(x) <- dn: Länge von 'dimnames' [2] ungleich der Arrayausdehnung
#> Timing stopped at: 0.008 0.044 0.201
ci_profile
#> 2.5% 97.5% #> parent_0 96.456003640 1.027703e+02 #> k_parent 0.090911032 1.071578e-01 #> k_m1 0.003892605 6.702778e-03 -- cgit v1.2.1