Normalisation factors for aerobic soil degradation according to FOCUS guidance

@@ -149,137 +88,121 @@ in Appendix 8 to the FOCUS kinetics guidance (FOCUS 2014, p. 369)." /> in Appendix 8 to the FOCUS kinetics guidance (FOCUS 2014, p. 369).

f_time_norm_focus(object, ...)
-
-# S3 method for numeric
-f_time_norm_focus(
-  object,
-  moisture = NA,
-  field_moisture = NA,
-  temperature = object,
-  Q10 = 2.58,
-  walker = 0.7,
-  f_na = NA,
-  ...
-)
-
-# S3 method for mkindsg
-f_time_norm_focus(
-  object,
-  study_moisture_ref_source = c("auto", "meta", "focus"),
-  Q10 = 2.58,
-  walker = 0.7,
-  f_na = NA,
-  ...
-)

f_time_norm_focus(object, ...)
+
+# S3 method for numeric
+f_time_norm_focus(
+  object,
+  moisture = NA,
+  field_moisture = NA,
+  temperature = object,
+  Q10 = 2.58,
+  walker = 0.7,
+  f_na = NA,
+  ...
+)
+
+# S3 method for mkindsg
+f_time_norm_focus(
+  object,
+  study_moisture_ref_source = c("auto", "meta", "focus"),
+  Q10 = 2.58,
+  walker = 0.7,
+  f_na = NA,
+  ...
+)

Arguments

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

object	An object containing information used for the calculations
...	Currently not used
moisture	Numeric vector of moisture contents in \% w/w
field_moisture	Numeric vector of moisture contents at field capacity -(pF2) in \% w/w
temperature	Numeric vector of temperatures in °C
Q10	The Q10 value used for temperature normalisation
walker	The Walker exponent used for moisture normalisation
f_na	The factor to use for NA values. If set to NA, only factors -for complete cases will be returned.
study_moisture_ref_source	Source for the reference value + + Arguments + object + An object containing information used for the calculations + ... + Currently not used + moisture + Numeric vector of moisture contents in \% w/w + field_moisture + Numeric vector of moisture contents at field capacity +(pF2) in \% w/w + temperature + Numeric vector of temperatures in °C + Q10 + The Q10 value used for temperature normalisation + walker + The Walker exponent used for moisture normalisation + f_na + The factor to use for NA values. If set to NA, only factors +for complete cases will be returned. + study_moisture_ref_source + Source for the reference value used to calculate the study moisture. If 'auto', preference is given to a reference moisture given in the meta information, otherwise -the focus soil moisture for the soil class is used

- -

References

- -

FOCUS (2006) “Guidance Document on Estimating Persistence +the focus soil moisture for the soil class is used

References

FOCUS (2006) “Guidance Document on Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in -EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, +EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, -http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics -FOCUS (2014) “Generic guidance for Estimating Persistence +http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics +FOCUS (2014) “Generic guidance for Estimating Persistence and Degradation Kinetics from Environmental Fate Studies on Pesticides in -EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, +EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, Version 1.1, 18 December 2014 -http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics

Examples

f_time_norm_focus(25, 20, 25) # 1.37, compare FOCUS 2014 p. 184
-
#> [1] 1.373956

-D24_2014$meta
-
#>                                 study usda_soil_type study_moisture_ref_type
-#> Mississippi                Cohen 1991      Silt loam                    <NA>
-#> Fayette     Liu and Adelfinskaya 2011      Silt loam                     pF1
-#> RefSol 03-G Liu and Adelfinskaya 2011           Loam                     pF1
-#> Site E1     Liu and Adelfinskaya 2011           Loam                     pF1
-#> Site I2     Liu and Adelfinskaya 2011     Loamy sand                     pF1
-#>             rel_moisture temperature
-#> Mississippi           NA          25
-#> Fayette              0.5          20
-#> RefSol 03-G          0.5          20
-#> Site E1              0.5          20
-#> Site I2              0.5          20
# No moisture normalisation in the first dataset, so we use f_na = 1 to get
-# temperature only normalisation as in the EU evaluation
-f_time_norm_focus(D24_2014, study_moisture_ref_source = "focus", f_na = 1)
-
#> $time_norm was set to
-#> [1] 1.6062378 0.7118732 0.7156063 0.7156063 0.8977124

Examples

f_time_norm_focus(25, 20, 25) # 1.37, compare FOCUS 2014 p. 184
+#> [1] 1.373956
+
+D24_2014$meta
+#>                                 study usda_soil_type study_moisture_ref_type
+#> Mississippi                Cohen 1991      Silt loam                    <NA>
+#> Fayette     Liu and Adelfinskaya 2011      Silt loam                     pF1
+#> RefSol 03-G Liu and Adelfinskaya 2011           Loam                     pF1
+#> Site E1     Liu and Adelfinskaya 2011           Loam                     pF1
+#> Site I2     Liu and Adelfinskaya 2011     Loamy sand                     pF1
+#>             rel_moisture temperature
+#> Mississippi           NA          25
+#> Fayette              0.5          20
+#> RefSol 03-G          0.5          20
+#> Site E1              0.5          20
+#> Site I2              0.5          20
+# No moisture normalisation in the first dataset, so we use f_na = 1 to get
+# temperature only normalisation as in the EU evaluation
+f_time_norm_focus(D24_2014, study_moisture_ref_source = "focus", f_na = 1)
+#> $f_time_norm was (re)set to normalised values
+

Normalisation factors for aerobic soil degradation according to FOCUS guidance

Arguments

Arguments

References

References

See also

See also

Examples

Examples