From 09f4f904af23a34d68d5d78482a5b9e12d9a9494 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Fri, 4 Nov 2016 15:38:09 +0100
Subject: Static documentation rebuilt by pkgdown::build_site()

With updated pkgdown with my PR
---
 docs/reference/index.html | 34 +++++++++++++++++++++++++++-------
 1 file changed, 27 insertions(+), 7 deletions(-)

(limited to 'docs/reference/index.html')

diff --git a/docs/reference/index.html b/docs/reference/index.html
index 23eb608b..b7d59a21 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -60,12 +60,7 @@
       </ul>
       
       <ul class="nav navbar-nav navbar-right">
-        <li>
-  <a href="http://github.com/jranke/mkin">
-    <span class="fa fa-github fa-lg"></span>
-     
-  </a>
-</li>
+        
       </ul>
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
@@ -115,7 +110,7 @@
       </ul>
       
       <p><a href="mkinparplot.html">Function to plot the confidence intervals obtained using
-    mkinfit</a></p>
+  list(list(&quot;mkinfit&quot;))</a></p>
       <ul>
         <li><code><a href="mkinparplot.html">mkinparplot</a></code></li>
       </ul>
@@ -124,6 +119,16 @@
       <ul>
         <li><code><a href="mkinresplot.html">mkinresplot</a></code></li>
       </ul>
+      
+      <p><a href="plot.mkinfit.html">Plot the observed data and the fitted model of an mkinfit object</a></p>
+      <ul>
+        <li><code><a href="plot.mkinfit.html">plot.mkinfit</a></code></li><li><code><a href="plot.mkinfit.html">plot_sep</a></code></li>
+      </ul>
+      
+      <p><a href="summary.mkinfit.html">Summary method for class &quot;mkinfit&quot;</a></p>
+      <ul>
+        <li><code><a href="summary.mkinfit.html">summary.mkinfit</a></code></li><li><code><a href="summary.mkinfit.html">print.summary.mkinfit</a></code></li>
+      </ul>
           <h2 id="section-work-with-mmkin-objects" class="hasAnchor"><a href="#section-work-with-mmkin-objects" class="anchor"></a>Work with mmkin objects</h2>
       <p class="section-desc"><p>Functions working with aggregated results</p></p>
 
@@ -176,6 +181,11 @@
         <li><code><a href="print.mkinds.html">print.mkinds</a></code></li>
       </ul>
       
+      <p><a href="schaefer07_complex_case.html">Metabolism data set used for checking the software quality of KinGUI</a></p>
+      <ul>
+        <li><code><a href="schaefer07_complex_case.html">schaefer07_complex_case</a></code></li><li><code><a href="schaefer07_complex_case.html">schaefer07_complex_results</a></code></li>
+      </ul>
+      
       <p><a href="synthetic_data_for_UBA.html">Synthetic datasets for one parent compound with two metabolites</a></p>
       <ul>
         <li><code><a href="synthetic_data_for_UBA.html">synthetic_data_for_UBA_2014</a></code></li>
@@ -189,6 +199,11 @@
         <li><code><a href="geometric_mean.html">geometric_mean</a></code></li>
       </ul>
       
+      <p><a href="ilr.html">Function to perform isometric log-ratio transformation</a></p>
+      <ul>
+        <li><code><a href="ilr.html">ilr</a></code></li><li><code><a href="ilr.html">invilr</a></code></li>
+      </ul>
+      
       <p><a href="mkin_long_to_wide.html">Convert a dataframe from long to wide format</a></p>
       <ul>
         <li><code><a href="mkin_long_to_wide.html">mkin_long_to_wide</a></code></li>
@@ -213,6 +228,11 @@
       <ul>
         <li><code><a href="print.mkinmod.html">print.mkinmod</a></code></li>
       </ul>
+      
+      <p><a href="transform_odeparms.html">Functions to transform and backtransform kinetic parameters for fitting</a></p>
+      <ul>
+        <li><code><a href="transform_odeparms.html">transform_odeparms</a></code></li><li><code><a href="transform_odeparms.html">backtransform_odeparms</a></code></li>
+      </ul>
           <h2 id="section-analytical-solutions" class="hasAnchor"><a href="#section-analytical-solutions" class="anchor"></a>Analytical solutions</h2>
       <p class="section-desc"><p>Parent only model solutions</p></p>
 
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