Main functions

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+ Main functions + Essential functionality +
+ `mkinmod` +	Function to set up a kinetic model with one or more state variables
+ `mkinfit` +	Fit a kinetic model to data with one or more state variables
+ `mmkin` +	Fit one or more kinetic models with one or more state variables to one or more datasets
+ Show results + Functions working with mkinfit objects +
+ `plot.mkinfit` +	Plot the observed data and the fitted model of an mkinfit object
+ `summary` `print` +	Summary method for class "mkinfit"
+ `mkinresplot` +	Function to plot residuals stored in an mkin object
+ `mkinparplot` +	Function to plot the confidence intervals obtained using mkinfit
+ `endpoints` +	Function to calculate endpoints for further use from kinetic models fitted with mkinfit
+ `mkinerrmin` +	Calculate the minimum error to assume in order to pass the variance test
+ Work with mmkin objects + Functions working with aggregated results +
+ `plot` +	Plot model fits (observed and fitted) and the residuals for a row or column of an mmkin object
+ Datasets and known results + +
+ `FOCUS_2006_datasets` +	Datasets A to F from the FOCUS Kinetics report from 2006
+ `data` +	Results of fitting the SFO model to Datasets A to F of FOCUS (2006)
+ `data` +	Results of fitting the FOMC model to Datasets A to F of FOCUS (2006)
+ `data` +	Results of fitting the HS model to Datasets A to F of FOCUS (2006)
+ `data` +	Results of fitting the DFOP model to Datasets A to B of FOCUS (2006)
+ `mccall81_245T` +	Datasets on aerobic soil metabolism of 2,4,5-T in six soils
+ `data` +	Metabolism data set used for checking the software quality of KinGUI
+ `synthetic_data_for_UBA_2014` +	Synthetic datasets for one parent compound with two metabolites
+ `mkinds` +	A dataset class for mkin
+ `print` +	Print mkinds objects
+ Helper functions + +
+ `mkin_wide_to_long` +	Convert a dataframe with observations over time into long format
+ `mkin_long_to_wide` +	Convert a dataframe from long to wide format
+ `mkinsub` +	Function to set up a kinetic submodel for one state variable
+ `print` +	Print mkinmod objects
+ `mkinpredict` +	Produce predictions from a kinetic model using specific parameters
+ `transform_odeparms` `backtransform_odeparms` +	Functions to transform and backtransform kinetic parameters for fitting
+ `ilr` `invilr` +	Function to perform isometric log-ratio transformation
+ `geometric_mean` +	Calculate the geometric mean
+ Analytical solutions + Parent only model solutions +
+ `SFO.solution` +	Single First-Order kinetics
+ `FOMC.solution` +	First-Order Multi-Compartment kinetics
+ `DFOP.solution` +	Double First-Order in Parallel kinetics
+ `SFORB.solution` +	Single First-Order Reversible Binding kinetics
+ `HS.solution` +	Hockey-Stick kinetics
+ `IORE.solution` +	Indeterminate order rate equation kinetics
+ Generate synthetic datasets + +
+ `add_err` +	Add normally distributed errors to simulated kinetic degradation data
+ Deprecated functions + Functions that have been superseeded +
+ `mkinplot` +	Plot the observed data and the fitted model of an mkinfit object

-- cgit v1.2.1

Function reference

version 0.9.45.1

+ Reference + version 0.9.45.2 +

Main functions

Show results

Work with mmkin objects

Datasets and known results

Helper functions

Analytical solutions

Generate synthetic datasets

Deprecated functions

Main functions

Show results

Work with mmkin objects

Datasets and known results

Helper functions

Analytical solutions

Generate synthetic datasets

Deprecated functions