From e5d1df9a9b1f0951d7dfbaf24eee4294470b73e2 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 17 Nov 2022 14:54:20 +0100 Subject: Complete update of online docs for v1.2.0 --- docs/reference/lrtest.mkinfit.html | 61 ++++++++++++++++++++++---------------- 1 file changed, 36 insertions(+), 25 deletions(-) (limited to 'docs/reference/lrtest.mkinfit.html') diff --git a/docs/reference/lrtest.mkinfit.html b/docs/reference/lrtest.mkinfit.html index bc8dab67..a053a032 100644 --- a/docs/reference/lrtest.mkinfit.html +++ b/docs/reference/lrtest.mkinfit.html @@ -21,7 +21,7 @@ and can be expressed by fixing the parameters of the other."> mkin - 1.1.0 + 1.2.0 @@ -48,11 +48,14 @@ and can be expressed by fixing the parameters of the other.">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models
  • - Example evaluation of FOCUS Example Dataset Z + Short demo of the multistart method
  • Performance benefit by using compiled model definitions in mkin
    • +
  • + Example evaluation of FOCUS Example Dataset Z +
  • Calculation of time weighted average concentrations with mkin
    • @@ -60,7 +63,10 @@ and can be expressed by fixing the parameters of the other.">Example evaluation of NAFTA SOP Attachment examples
  • - Some benchmark timings + Benchmark timings for mkin +
    • +
  • + Benchmark timings for saem.mmkin
  • @@ -95,11 +101,11 @@ and can be expressed by fixing the parameters of the other.

    - 
    # S3 method for mkinfit
-lrtest(object, object_2 = NULL, ...)
-
-# S3 method for mmkin
-lrtest(object, ...)
    + 
    # S3 method for mkinfit
+lrtest(object, object_2 = NULL, ...)
+
+# S3 method for mmkin
+lrtest(object, ...)
    @@ -107,11 +113,16 @@ and can be expressed by fixing the parameters of the other.

    object

    An mkinfit object, or an mmkin column object containing two fits to the same data.

    + +
    object_2

    Optionally, another mkinfit object fitted to the same data.

    + +
    ...

    Argument to mkinfit, passed to update.mkinfit for creating the alternative fitted object.

    +

    Details

    @@ -125,11 +136,11 @@ lower number of fitted parameters (null hypothesis).

    Examples

    - 
    # \dontrun{
-test_data <- subset(synthetic_data_for_UBA_2014[[12]]$data, name == "parent")
-sfo_fit <- mkinfit("SFO", test_data, quiet = TRUE)
-dfop_fit <- mkinfit("DFOP", test_data, quiet = TRUE)
-lrtest(dfop_fit, sfo_fit)
+    
    # \dontrun{
+test_data <- subset(synthetic_data_for_UBA_2014[[12]]$data, name == "parent")
+sfo_fit <- mkinfit("SFO", test_data, quiet = TRUE)
+dfop_fit <- mkinfit("DFOP", test_data, quiet = TRUE)
+lrtest(dfop_fit, sfo_fit)
 #> Likelihood ratio test
 #> 
 #> Model 1: DFOP with error model const
@@ -139,7 +150,7 @@ lower number of fitted parameters (null hypothesis).
    
 #> 2   3 -63.954 -2 43.002  4.594e-10 ***
 #> ---
 #> Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
-lrtest(sfo_fit, dfop_fit)
+lrtest(sfo_fit, dfop_fit)
 #> Likelihood ratio test
 #> 
 #> Model 1: DFOP with error model const
@@ -149,14 +160,14 @@ lower number of fitted parameters (null hypothesis).
    
 #> 2   3 -63.954 -2 43.002  4.594e-10 ***
 #> ---
 #> Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
-
-# The following two examples are commented out as they fail during
-# generation of the static help pages by pkgdown
-#lrtest(dfop_fit, error_model = "tc")
-#lrtest(dfop_fit, fixed_parms = c(k2 = 0))
-
-# However, this equivalent syntax also works for static help pages
-lrtest(dfop_fit, update(dfop_fit, error_model = "tc"))
+
+# The following two examples are commented out as they fail during
+# generation of the static help pages by pkgdown
+#lrtest(dfop_fit, error_model = "tc")
+#lrtest(dfop_fit, fixed_parms = c(k2 = 0))
+
+# However, this equivalent syntax also works for static help pages
+lrtest(dfop_fit, update(dfop_fit, error_model = "tc"))
 #> Likelihood ratio test
 #> 
 #> Model 1: DFOP with error model tc
@@ -166,7 +177,7 @@ lower number of fitted parameters (null hypothesis).
    
 #> 2   5 -42.453 -1 15.731  7.302e-05 ***
 #> ---
 #> Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
-lrtest(dfop_fit, update(dfop_fit, fixed_parms = c(k2 = 0)))
+lrtest(dfop_fit, update(dfop_fit, fixed_parms = c(k2 = 0)))
 #> Likelihood ratio test
 #> 
 #> Model 1: DFOP with error model const
@@ -176,7 +187,7 @@ lower number of fitted parameters (null hypothesis).
    
 #> 2   4 -57.340 -1 29.776  4.851e-08 ***
 #> ---
 #> Signif. codes:  0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
-# }
+# }
    @@ -191,7 +202,7 @@ lower number of fitted parameters (null hypothesis).

    -

    Site built with pkgdown 2.0.3.

    +

    Site built with pkgdown 2.0.6.

    -- cgit v1.2.1