From e05656d57668688b971c28e32b4cfd4d3eac4662 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 18 Sep 2019 13:03:50 +0200 Subject: Correct and rebuild docs - Reconcile docs and code for max_twa_parent - Correct links to docs in twa vignette - Static documentation rebuilt by pkgdown --- docs/reference/mccall81_245T.html | 36 ++++++++++++++++++++++++------------ 1 file changed, 24 insertions(+), 12 deletions(-) (limited to 'docs/reference/mccall81_245T.html') diff --git a/docs/reference/mccall81_245T.html b/docs/reference/mccall81_245T.html index aa888f0f..91c55a6a 100644 --- a/docs/reference/mccall81_245T.html +++ b/docs/reference/mccall81_245T.html @@ -16,13 +16,15 @@ - + + - - + + + @@ -49,6 +51,7 @@ + @@ -118,6 +121,7 @@ +
@@ -149,7 +153,9 @@ treatment

value

a numeric vector containing concentrations in percent of applied radioactivity

soil

a factor containing the name of the soil

- + + +

Source

@@ -158,9 +164,10 @@

Examples

- 
  SFO_SFO_SFO <- mkinmod(T245 = list(type = "SFO", to = "phenol"),
-                         phenol = list(type = "SFO", to = "anisole"),
-                         anisole = list(type = "SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
  
    fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"), quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
    summary(fit.1)$bpar
#> Warning: NaNs wurden erzeugt
#>                      Estimate   se_notrans   t value       Pr(>t)        Lower
+    
  SFO_SFO_SFO <- mkinmod(T245 = list(type = "SFO", to = "phenol"),
+                         phenol = list(type = "SFO", to = "anisole"),
+                         anisole = list(type = "SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
  # \dontrun{
+    fit.1 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"), quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
    summary(fit.1)$bpar
#> Warning: NaNs wurden erzeugt
#>                      Estimate   se_notrans   t value       Pr(>t)        Lower
 #> T245_0           1.038550e+02 2.1508110557 48.286452 3.542232e-18 99.246062215
 #> k_T245_sink      1.636106e-02          NaN       NaN          NaN  0.012661558
 #> k_T245_phenol    2.700936e-02          NaN       NaN          NaN  0.024487315
@@ -188,9 +195,9 @@
 #> phenol    1.711229   5.68458
 #> anisole 103.784092 344.76329
 #> 
    # k_phenol_sink is really small, therefore fix it to zero
-    fit.2 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"),
-                   parms.ini = c(k_phenol_sink = 0),
-                   fixed_parms = "k_phenol_sink", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
    summary(fit.2)$bpar
#>                      Estimate   se_notrans   t value       Pr(>t)        Lower
+    fit.2 <- mkinfit(SFO_SFO_SFO, subset(mccall81_245T, soil == "Commerce"),
+                   parms.ini = c(k_phenol_sink = 0),
+                   fixed_parms = "k_phenol_sink", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
    summary(fit.2)$bpar
#>                      Estimate   se_notrans   t value       Pr(>t)        Lower
 #> T245_0           1.038550e+02 2.1623653063 48.028441 4.993105e-19 99.271025146
 #> k_T245_sink      1.636106e-02 0.0019676255  8.315130 1.673674e-07  0.012679148
 #> k_T245_phenol    2.700936e-02 0.0012421966 21.743224 1.314080e-13  0.024500319
@@ -215,7 +222,8 @@
 #> T245     15.982025  53.09114
 #> phenol    1.711229   5.68458
 #> anisole 103.784092 344.76329
-#> 
    plot_sep(fit.2)
  

+#> 
    plot_sep(fit.2)
  # }
+
+ + + -- cgit v1.2.1