From 10f2314d12bc1e1664b1ff1db015d1df9f7fbe34 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 26 Feb 2019 21:12:21 +0100 Subject: Static documentation rebuilt by pkgdown --- docs/reference/mkinfit.html | 47 ++++++++++++++++++++++++--------------------- 1 file changed, 25 insertions(+), 22 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 84c0fc49..2494faf9 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -107,6 +107,9 @@
  • Calculation of time weighted average concentrations with mkin
    • +
  • + Example evaluation of NAFTA SOP Attachment examples +
  • @@ -438,8 +441,8 @@ fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:36 2019 -#> Date of summary: Tue Feb 26 20:23:36 2019 +#> Date of fit: Tue Feb 26 21:07:47 2019 +#> Date of summary: Tue Feb 26 21:07:47 2019 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent @@ -515,7 +518,7 @@ m1 = mkinsub("SFO"))
    #> Successfully compiled differential equation model from auto-generated C code.
    # Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
    #> User System verstrichen -#> 1.081 0.000 1.081
    coef(fit)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 1.111 0.000 1.112
    coef(fit)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
    endpoints(fit)
    #> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -590,7 +593,7 @@ #> Model cost at call 146 : 371.2134 #> Optimisation by method Port successfully terminated. #> User System verstrichen -#> 0.812 0.000 0.812
    coef(fit.deSolve)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.826 0.000 0.827
    coef(fit.deSolve)
    #> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
    endpoints(fit.deSolve)
    #> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -628,8 +631,8 @@ m1 = mkinsub("SFO"), use_of_ff = "max")
    #> Successfully compiled differential equation model from auto-generated C code.
    f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE) summary(f.noweight)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:48 2019 -#> Date of summary: Tue Feb 26 20:23:48 2019 +#> Date of fit: Tue Feb 26 21:07:59 2019 +#> Date of summary: Tue Feb 26 21:07:59 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -637,7 +640,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 186 model solutions performed in 0.852 s +#> Fitted with method Port using 186 model solutions performed in 0.841 s #> #> Weighting: none #> @@ -745,8 +748,8 @@ #> 120 m1 33.31 28.78984 4.520e+00
    f.irls <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, reweight.method = "obs", quiet = TRUE) summary(f.irls)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:51 2019 -#> Date of summary: Tue Feb 26 20:23:51 2019 +#> Date of fit: Tue Feb 26 21:08:02 2019 +#> Date of summary: Tue Feb 26 21:08:02 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -754,7 +757,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 551 model solutions performed in 2.6 s +#> Fitted with method Port using 551 model solutions performed in 2.596 s #> #> Weighting: none #> @@ -867,8 +870,8 @@ #> 120 m1 33.31 28.80898 4.501e+00 2.722
    f.w.mean <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, weight = "mean", quiet = TRUE) summary(f.w.mean)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:52 2019 -#> Date of summary: Tue Feb 26 20:23:52 2019 +#> Date of fit: Tue Feb 26 21:08:03 2019 +#> Date of summary: Tue Feb 26 21:08:03 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -876,7 +879,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 155 model solutions performed in 0.704 s +#> Fitted with method Port using 155 model solutions performed in 0.701 s #> #> Weighting: mean #> @@ -985,8 +988,8 @@ quiet = TRUE) summary(f.w.value)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:53 2019 -#> Date of summary: Tue Feb 26 20:23:53 2019 +#> Date of fit: Tue Feb 26 21:08:03 2019 +#> Date of summary: Tue Feb 26 21:08:03 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -994,7 +997,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 174 model solutions performed in 0.796 s +#> Fitted with method Port using 174 model solutions performed in 0.795 s #> #> Weighting: manual #> @@ -1105,8 +1108,8 @@ f.w.man <- mkinfit(SFO_SFO.ff, dw, err = "err.man", quiet = TRUE) summary(f.w.man)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:54 2019 -#> Date of summary: Tue Feb 26 20:23:54 2019 +#> Date of fit: Tue Feb 26 21:08:05 2019 +#> Date of summary: Tue Feb 26 21:08:05 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1114,7 +1117,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 270 model solutions performed in 1.238 s +#> Fitted with method Port using 270 model solutions performed in 1.24 s #> #> Weighting: manual #> @@ -1223,8 +1226,8 @@ reweight.method = "obs") summary(f.w.man.irls)
    #> mkin version used for fitting: 0.9.48.1 #> R version used for fitting: 3.5.2 -#> Date of fit: Tue Feb 26 20:23:58 2019 -#> Date of summary: Tue Feb 26 20:23:58 2019 +#> Date of fit: Tue Feb 26 21:08:08 2019 +#> Date of summary: Tue Feb 26 21:08:08 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1232,7 +1235,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 692 model solutions performed in 3.182 s +#> Fitted with method Port using 692 model solutions performed in 3.192 s #> #> Weighting: manual #> -- cgit v1.2.1