From 1c7b39f3c542de75a1ba685fec3c154bef8a3301 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 18 Sep 2019 18:30:21 +0200 Subject: Static documentation rebuilt by pkgdown to check if the link to the pfm package is correctly generated by pkgdown after preparing the pfm package docs accordingly --- docs/reference/mkinfit.html | 28 ++++++++++++++-------------- 1 file changed, 14 insertions(+), 14 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 954086b5..dc052f2a 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -408,15 +408,15 @@ Per default, parameters in the kinetic models are internally transformed in fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
#> mkin version used for fitting: 0.9.49.6 #> R version used for fitting: 3.6.1 -#> Date of fit: Wed Sep 18 17:53:04 2019 -#> Date of summary: Wed Sep 18 17:53:04 2019 +#> Date of fit: Wed Sep 18 18:22:06 2019 +#> Date of summary: Wed Sep 18 18:22:06 2019 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted using 222 model solutions performed in 0.467 s +#> Fitted using 222 model solutions performed in 0.459 s #> #> Error model: Constant variance #> @@ -490,7 +490,7 @@ Per default, parameters in the kinetic models are internally transformed in m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> Warning: Observations with value of zero were removed from the data
#> User System verstrichen -#> 1.524 0.000 1.527
coef(fit)
#> NULL
endpoints(fit)
#> $ff +#> 1.494 0.000 1.496
coef(fit)
#> NULL
endpoints(fit)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 #> @@ -563,7 +563,7 @@ Per default, parameters in the kinetic models are internally transformed in #> Sum of squared residuals at call 126: 371.2134 #> Sum of squared residuals at call 135: 371.2134 #> Negative log-likelihood at call 145: 97.22429
#> Optimisation successfully terminated.
#> User System verstrichen -#> 1.115 0.000 1.116
coef(fit.deSolve)
#> NULL
endpoints(fit.deSolve)
#> $ff +#> 1.056 0.000 1.057
coef(fit.deSolve)
#> NULL
endpoints(fit.deSolve)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 #> @@ -599,8 +599,8 @@ Per default, parameters in the kinetic models are internally transformed in SFO_SFO.ff <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.noweight)
#> mkin version used for fitting: 0.9.49.6 #> R version used for fitting: 3.6.1 -#> Date of fit: Wed Sep 18 17:53:19 2019 -#> Date of summary: Wed Sep 18 17:53:19 2019 +#> Date of fit: Wed Sep 18 18:22:22 2019 +#> Date of summary: Wed Sep 18 18:22:22 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -608,7 +608,7 @@ Per default, parameters in the kinetic models are internally transformed in #> #> Model predictions using solution type deSolve #> -#> Fitted using 421 model solutions performed in 1.167 s +#> Fitted using 421 model solutions performed in 1.15 s #> #> Error model: Constant variance #> @@ -718,8 +718,8 @@ Per default, parameters in the kinetic models are internally transformed in #> 120 m1 25.15 28.78984 -3.640e+00 #> 120 m1 33.31 28.78984 4.520e+00
f.obs <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, error_model = "obs", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.obs)
#> mkin version used for fitting: 0.9.49.6 #> R version used for fitting: 3.6.1 -#> Date of fit: Wed Sep 18 17:53:22 2019 -#> Date of summary: Wed Sep 18 17:53:22 2019 +#> Date of fit: Wed Sep 18 18:22:24 2019 +#> Date of summary: Wed Sep 18 18:22:24 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -727,7 +727,7 @@ Per default, parameters in the kinetic models are internally transformed in #> #> Model predictions using solution type deSolve #> -#> Fitted using 979 model solutions performed in 2.583 s +#> Fitted using 979 model solutions performed in 2.553 s #> #> Error model: Variance unique to each observed variable #> @@ -850,8 +850,8 @@ Per default, parameters in the kinetic models are internally transformed in #> 120 m1 25.15 28.80429 -3.654e+00 #> 120 m1 33.31 28.80429 4.506e+00
f.tc <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, error_model = "tc", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.tc)
#> mkin version used for fitting: 0.9.49.6 #> R version used for fitting: 3.6.1 -#> Date of fit: Wed Sep 18 17:53:31 2019 -#> Date of summary: Wed Sep 18 17:53:31 2019 +#> Date of fit: Wed Sep 18 18:22:34 2019 +#> Date of summary: Wed Sep 18 18:22:34 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -859,7 +859,7 @@ Per default, parameters in the kinetic models are internally transformed in #> #> Model predictions using solution type deSolve #> -#> Fitted using 2289 model solutions performed in 9.35 s +#> Fitted using 2289 model solutions performed in 9.369 s #> #> Error model: Two-component variance function #> -- cgit v1.2.1