From 30f55769fe2f042c7753144051dd34eec3596adc Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 18 Nov 2016 16:48:21 +0100 Subject: Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE) Again with the jranke branch of jranke/pkgdown --- docs/reference/mkinfit.html | 71 +++++++++++++++++++++++++++------------------ 1 file changed, 43 insertions(+), 28 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 99b10f43..a912b065 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -49,13 +49,28 @@
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 15:36:12 2016 -#> Date of summary: Fri Nov 18 15:36:12 2016 +#> Date of fit: Fri Nov 18 16:45:39 2016 +#> Date of summary: Fri Nov 18 16:45:39 2016 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted with method Port using 64 model solutions performed in 0.157 s +#> Fitted with method Port using 64 model solutions performed in 0.146 s #> #> Weighting: none #> @@ -436,7 +451,7 @@ m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> user system elapsed -#> 1.264 1.216 0.945
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 1.220 1.216 0.920
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -513,7 +528,7 @@ #> Model cost at call 152 : 371.2134 #> Optimisation by method Port successfully terminated. #> user system elapsed -#> 0.712 0.036 0.702
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.724 0.048 0.722
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit.deSolve)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -556,8 +571,8 @@ m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE) summary(f.noweight)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 15:36:22 2016 -#> Date of summary: Fri Nov 18 15:36:22 2016 +#> Date of fit: Fri Nov 18 16:45:50 2016 +#> Date of summary: Fri Nov 18 16:45:50 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -565,7 +580,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 185 model solutions performed in 0.752 s +#> Fitted with method Port using 185 model solutions performed in 0.872 s #> #> Weighting: none #> @@ -677,8 +692,8 @@ #> 120 m1 33.31 2.879e+01 4.520e+00
f.irls <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, reweight.method = "obs", quiet = TRUE) summary(f.irls)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 15:36:24 2016 -#> Date of summary: Fri Nov 18 15:36:24 2016 +#> Date of fit: Fri Nov 18 16:45:52 2016 +#> Date of summary: Fri Nov 18 16:45:52 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -686,7 +701,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 486 model solutions performed in 2.047 s +#> Fitted with method Port using 486 model solutions performed in 2.009 s #> #> Weighting: none then iterative reweighting method obs #> @@ -798,8 +813,8 @@ #> 120 m1 33.31 2.881e+01 4.501e+00 2.722
f.w.mean <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, weight = "mean", quiet = TRUE) summary(f.w.mean)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 15:36:25 2016 -#> Date of summary: Fri Nov 18 15:36:25 2016 +#> Date of fit: Fri Nov 18 16:45:53 2016 +#> Date of summary: Fri Nov 18 16:45:53 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -807,7 +822,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 155 model solutions performed in 0.653 s +#> Fitted with method Port using 155 model solutions performed in 0.647 s #> #> Weighting: mean #> @@ -920,8 +935,8 @@ quiet = TRUE) summary(f.w.value)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 15:36:26 2016 -#> Date of summary: Fri Nov 18 15:36:26 2016 +#> Date of fit: Fri Nov 18 16:45:54 2016 +#> Date of summary: Fri Nov 18 16:45:54 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -929,7 +944,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 174 model solutions performed in 0.708 s +#> Fitted with method Port using 174 model solutions performed in 0.749 s #> #> Weighting: manual #> @@ -1042,8 +1057,8 @@ f.w.man <- mkinfit(SFO_SFO.ff, dw, err = "err.man", quiet = TRUE) summary(f.w.man)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 15:36:27 2016 -#> Date of summary: Fri Nov 18 15:36:27 2016 +#> Date of fit: Fri Nov 18 16:45:55 2016 +#> Date of summary: Fri Nov 18 16:45:55 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1164,8 +1179,8 @@ reweight.method = "obs") summary(f.w.man.irls)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 15:36:30 2016 -#> Date of summary: Fri Nov 18 15:36:30 2016 +#> Date of fit: Fri Nov 18 16:45:58 2016 +#> Date of summary: Fri Nov 18 16:45:58 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1173,7 +1188,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 648 model solutions performed in 2.694 s +#> Fitted with method Port using 648 model solutions performed in 2.738 s #> #> Weighting: manual then iterative reweighting method obs #> -- cgit v1.2.1