From 39b2c2c762b03922a2648b1b226d0f308600cc87 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 6 Jun 2018 01:24:15 +0200 Subject: Static documentation rebuilt by pkgdown 1.1.0 --- docs/reference/mkinfit.html | 47 ++++++++++++++++++++++++++++++--------------- 1 file changed, 32 insertions(+), 15 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 8ac8295f..d0b54098 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -21,12 +21,15 @@ + + + - - - + + + + using the argument reweight.method = "obs"." /> + + + @@ -63,8 +69,12 @@ - mkin + + mkin + 0.9.47.1 + + @@ -112,12 +123,15 @@ -
+

Fit a kinetic model to data with one or more state variables

+ +
+

This function uses the Flexible Modelling Environment package FME to create a function calculating the model cost, i.e. the @@ -131,6 +145,7 @@ observed variable can optionally be iteratively reweighted until convergence using the argument reweight.method = "obs".

+ 
mkinfit(mkinmod, observed,
   parms.ini = "auto",
@@ -154,7 +169,7 @@
   reweight.tol = 1e-8, reweight.max.iter = 10,
   trace_parms = FALSE, ...)
-

Arguments

+

Arguments

@@ -384,10 +399,10 @@

See also

-

Plotting methods plot.mkinfit and +

Plotting methods plot.mkinfit and mkinparplot.

Fitting of several models to several datasets in a single call to - mmkin.

+ mmkin.

Note

@@ -413,16 +428,16 @@ 
# Use shorthand notation for parent only degradation
 fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE)
 summary(fit)
#> mkin version used for fitting:    0.9.47.1 
-#> R version used for fitting:       3.4.4 
-#> Date of fit:     Wed Mar 21 18:14:33 2018 
-#> Date of summary: Wed Mar 21 18:14:33 2018 
+#> R version used for fitting:       3.5.0 
+#> Date of fit:     Wed Jun  6 01:21:36 2018 
+#> Date of summary: Wed Jun  6 01:21:36 2018 
 #> 
 #> Equations:
 #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 #> 
 #> Model predictions using solution type analytical 
 #> 
-#> Fitted with method Port using 64 model solutions performed in 0.14 s
+#> Fitted with method Port using 64 model solutions performed in 0.143 s
 #> 
 #> Weighting: none
 #> 
@@ -490,8 +505,8 @@
   parent = mkinsub("SFO", "m1"),
   m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults
 print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D,
-                           solution_type = "eigen", quiet = TRUE)))
#>    user  system elapsed 
-#>   0.834   0.000   0.835 
coef(fit)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
+                           solution_type = "eigen", quiet = TRUE)))
#>        User      System verstrichen 
+#>       0.927       0.000       0.929 
coef(fit)
#>          parent_0 log_k_parent_sink   log_k_parent_m1     log_k_m1_sink 
 #>          99.59848          -3.03822          -2.98030          -5.24750 
endpoints(fit)
#> $ff
 #> parent_sink   parent_m1     m1_sink 
 #>    0.485524    0.514476    1.000000 
@@ -597,6 +612,8 @@
       
    

 
+  
+
   
 
 
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