From 6211f3ef4995657798686d8d4ab43ed9406e8a08 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Tue, 12 May 2020 16:34:00 +0200 Subject: Update vignettes and docs --- docs/reference/mkinfit.html | 26 +++++++++++++------------- 1 file changed, 13 insertions(+), 13 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 5d8dd81c..54ca377f 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -422,8 +422,8 @@ Degradation Data. Environments 6(12) 124 fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
#> mkin version used for fitting: 0.9.50.2 #> R version used for fitting: 4.0.0 -#> Date of fit: Tue May 12 10:55:39 2020 -#> Date of summary: Tue May 12 10:55:39 2020 +#> Date of fit: Tue May 12 15:29:48 2020 +#> Date of summary: Tue May 12 15:29:48 2020 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent @@ -507,7 +507,7 @@ Degradation Data. Environments 6(12) 124 m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> Warning: Observations with value of zero were removed from the data
#> User System verstrichen -#> 0.408 0.001 0.410
parms(fit)
#> parent_0 k_parent k_m1 f_parent_to_m1 sigma +#> 0.417 0.000 0.417
parms(fit)
#> parent_0 k_parent k_m1 f_parent_to_m1 sigma #> 99.598483222 0.098697734 0.005260651 0.514475962 3.125503875
endpoints(fit)
#> $ff #> parent_m1 parent_sink #> 0.514476 0.485524 @@ -597,7 +597,7 @@ Degradation Data. Environments 6(12) 124 #> Sum of squared residuals at call 166: 371.2134 #> Sum of squared residuals at call 168: 371.2134 #> Negative log-likelihood at call 178: 97.22429
#> Optimisation successfully terminated.
#> User System verstrichen -#> 0.353 0.000 0.352
parms(fit.deSolve)
#> parent_0 k_parent k_m1 f_parent_to_m1 sigma +#> 0.363 0.001 0.364
parms(fit.deSolve)
#> parent_0 k_parent k_m1 f_parent_to_m1 sigma #> 99.598480759 0.098697739 0.005260651 0.514475958 3.125503874
endpoints(fit.deSolve)
#> $ff #> parent_m1 parent_sink #> 0.514476 0.485524 @@ -631,8 +631,8 @@ Degradation Data. Environments 6(12) 124 SFO_SFO.ff <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.noweight)
#> mkin version used for fitting: 0.9.50.2 #> R version used for fitting: 4.0.0 -#> Date of fit: Tue May 12 10:55:44 2020 -#> Date of summary: Tue May 12 10:55:44 2020 +#> Date of fit: Tue May 12 15:29:53 2020 +#> Date of summary: Tue May 12 15:29:53 2020 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -640,7 +640,7 @@ Degradation Data. Environments 6(12) 124 #> #> Model predictions using solution type analytical #> -#> Fitted using 421 model solutions performed in 0.147 s +#> Fitted using 421 model solutions performed in 0.13 s #> #> Error model: Constant variance #> @@ -753,8 +753,8 @@ Degradation Data. Environments 6(12) 124 #> 120 m1 25.15 28.78984 -3.640e+00 #> 120 m1 33.31 28.78984 4.520e+00
f.obs <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, error_model = "obs", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.obs)
#> mkin version used for fitting: 0.9.50.2 #> R version used for fitting: 4.0.0 -#> Date of fit: Tue May 12 10:55:44 2020 -#> Date of summary: Tue May 12 10:55:44 2020 +#> Date of fit: Tue May 12 15:29:53 2020 +#> Date of summary: Tue May 12 15:29:53 2020 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -762,7 +762,7 @@ Degradation Data. Environments 6(12) 124 #> #> Model predictions using solution type analytical #> -#> Fitted using 978 model solutions performed in 0.334 s +#> Fitted using 978 model solutions performed in 0.337 s #> #> Error model: Variance unique to each observed variable #> @@ -890,8 +890,8 @@ Degradation Data. Environments 6(12) 124 #> 120 m1 25.15 28.80429 -3.654e+00 #> 120 m1 33.31 28.80429 4.506e+00
f.tc <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, error_model = "tc", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.tc)
#> mkin version used for fitting: 0.9.50.2 #> R version used for fitting: 4.0.0 -#> Date of fit: Tue May 12 10:55:45 2020 -#> Date of summary: Tue May 12 10:55:45 2020 +#> Date of fit: Tue May 12 15:29:54 2020 +#> Date of summary: Tue May 12 15:29:54 2020 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -899,7 +899,7 @@ Degradation Data. Environments 6(12) 124 #> #> Model predictions using solution type analytical #> -#> Fitted using 1875 model solutions performed in 0.643 s +#> Fitted using 1875 model solutions performed in 0.645 s #> #> Error model: Two-component variance function #> -- cgit v1.2.1