From 7e8d788d298b8e1492fd8f62d88456e99e0f5992 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 4 Jul 2019 08:10:33 +0200 Subject: Address failures of CRAN checks, improve NEWS Static documentation rebuilt by pkgdown --- docs/reference/mkinfit.html | 28 ++++++++++++++-------------- 1 file changed, 14 insertions(+), 14 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 3e20fc5d..0983007e 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -399,15 +399,15 @@ Per default, parameters in the kinetic models are internally transformed in fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
#> mkin version used for fitting: 0.9.49.5 #> R version used for fitting: 3.6.0 -#> Date of fit: Wed Jul 3 16:36:58 2019 -#> Date of summary: Wed Jul 3 16:36:58 2019 +#> Date of fit: Thu Jul 4 08:02:21 2019 +#> Date of summary: Thu Jul 4 08:02:21 2019 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted using 222 model solutions performed in 0.46 s +#> Fitted using 222 model solutions performed in 0.464 s #> #> Error model: Constant variance #> @@ -481,7 +481,7 @@ Per default, parameters in the kinetic models are internally transformed in m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> Warning: Observations with value of zero were removed from the data
#> User System verstrichen -#> 1.497 0.000 1.499
coef(fit)
#> NULL
endpoints(fit)
#> $ff +#> 1.507 0.004 1.511
coef(fit)
#> NULL
endpoints(fit)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 #> @@ -553,7 +553,7 @@ Per default, parameters in the kinetic models are internally transformed in #> Sum of squared residuals at call 126: 371.2134 #> Sum of squared residuals at call 135: 371.2134 #> Negative log-likelihood at call 145: 97.22429
#> Optimisation successfully terminated.
#> User System verstrichen -#> 1.079 0.000 1.079
coef(fit.deSolve)
#> NULL
endpoints(fit.deSolve)
#> $ff +#> 1.078 0.000 1.078
coef(fit.deSolve)
#> NULL
endpoints(fit.deSolve)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 #> @@ -585,8 +585,8 @@ Per default, parameters in the kinetic models are internally transformed in SFO_SFO.ff <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.noweight)
#> mkin version used for fitting: 0.9.49.5 #> R version used for fitting: 3.6.0 -#> Date of fit: Wed Jul 3 16:37:14 2019 -#> Date of summary: Wed Jul 3 16:37:14 2019 +#> Date of fit: Thu Jul 4 08:02:37 2019 +#> Date of summary: Thu Jul 4 08:02:37 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -594,7 +594,7 @@ Per default, parameters in the kinetic models are internally transformed in #> #> Model predictions using solution type deSolve #> -#> Fitted using 421 model solutions performed in 1.107 s +#> Fitted using 421 model solutions performed in 1.096 s #> #> Error model: Constant variance #> @@ -704,8 +704,8 @@ Per default, parameters in the kinetic models are internally transformed in #> 120 m1 25.15 28.78984 -3.640e+00 #> 120 m1 33.31 28.78984 4.520e+00
f.obs <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, error_model = "obs", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.obs)
#> mkin version used for fitting: 0.9.49.5 #> R version used for fitting: 3.6.0 -#> Date of fit: Wed Jul 3 16:37:17 2019 -#> Date of summary: Wed Jul 3 16:37:17 2019 +#> Date of fit: Thu Jul 4 08:02:40 2019 +#> Date of summary: Thu Jul 4 08:02:40 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -713,7 +713,7 @@ Per default, parameters in the kinetic models are internally transformed in #> #> Model predictions using solution type deSolve #> -#> Fitted using 979 model solutions performed in 2.612 s +#> Fitted using 979 model solutions performed in 2.574 s #> #> Error model: Variance unique to each observed variable #> @@ -836,8 +836,8 @@ Per default, parameters in the kinetic models are internally transformed in #> 120 m1 25.15 28.80429 -3.654e+00 #> 120 m1 33.31 28.80429 4.506e+00
f.tc <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, error_model = "tc", quiet = TRUE)
#> Warning: Observations with value of zero were removed from the data
summary(f.tc)
#> mkin version used for fitting: 0.9.49.5 #> R version used for fitting: 3.6.0 -#> Date of fit: Wed Jul 3 16:37:26 2019 -#> Date of summary: Wed Jul 3 16:37:26 2019 +#> Date of fit: Thu Jul 4 08:02:49 2019 +#> Date of summary: Thu Jul 4 08:02:49 2019 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -845,7 +845,7 @@ Per default, parameters in the kinetic models are internally transformed in #> #> Model predictions using solution type deSolve #> -#> Fitted using 2289 model solutions performed in 9.522 s +#> Fitted using 2289 model solutions performed in 9.379 s #> #> Error model: Two-component variance function #> -- cgit v1.2.1