From b2cbfc35e4c2b3f8dbb2e9d83ab1f4b358427896 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 14 Sep 2018 17:20:20 +0200 Subject: Update NEWS Static documentation rebuilt by pkgdown --- docs/reference/mkinfit.html | 46 ++++++++++++++++++++++----------------------- 1 file changed, 23 insertions(+), 23 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index 0f2bb875..2d5ed97f 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -434,15 +434,15 @@ fit <- mkinfit("FOMC", FOCUS_2006_C, quiet = TRUE) summary(fit)
#> mkin version used for fitting: 0.9.47.5 #> R version used for fitting: 3.5.1 -#> Date of fit: Fri Sep 14 16:53:29 2018 -#> Date of summary: Fri Sep 14 16:53:29 2018 +#> Date of fit: Fri Sep 14 17:41:42 2018 +#> Date of summary: Fri Sep 14 17:41:42 2018 #> #> Equations: #> d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent #> #> Model predictions using solution type analytical #> -#> Fitted with method Port using 64 model solutions performed in 0.158 s +#> Fitted with method Port using 64 model solutions performed in 0.153 s #> #> Weighting: none #> @@ -511,7 +511,7 @@ m1 = mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> User System verstrichen -#> 0.909 0.000 0.910
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.946 0.000 0.947
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -586,7 +586,7 @@ #> Model cost at call 146 : 371.2134 #> Optimisation by method Port successfully terminated. #> User System verstrichen -#> 0.749 0.000 0.749
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.762 0.000 0.763
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit.deSolve)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -624,8 +624,8 @@ m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE) summary(f.noweight)
#> mkin version used for fitting: 0.9.47.5 #> R version used for fitting: 3.5.1 -#> Date of fit: Fri Sep 14 16:53:40 2018 -#> Date of summary: Fri Sep 14 16:53:40 2018 +#> Date of fit: Fri Sep 14 17:41:54 2018 +#> Date of summary: Fri Sep 14 17:41:54 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -633,7 +633,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 186 model solutions performed in 0.79 s +#> Fitted with method Port using 186 model solutions performed in 0.874 s #> #> Weighting: none #> @@ -741,8 +741,8 @@ #> 120 m1 33.31 28.78984 4.520e+00
f.irls <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, reweight.method = "obs", quiet = TRUE) summary(f.irls)
#> mkin version used for fitting: 0.9.47.5 #> R version used for fitting: 3.5.1 -#> Date of fit: Fri Sep 14 16:53:43 2018 -#> Date of summary: Fri Sep 14 16:53:43 2018 +#> Date of fit: Fri Sep 14 17:41:56 2018 +#> Date of summary: Fri Sep 14 17:41:56 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -750,7 +750,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 551 model solutions performed in 2.278 s +#> Fitted with method Port using 551 model solutions performed in 2.493 s #> #> Weighting: none #> @@ -863,8 +863,8 @@ #> 120 m1 33.31 28.80898 4.501e+00 2.722
f.w.mean <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, weight = "mean", quiet = TRUE) summary(f.w.mean)
#> mkin version used for fitting: 0.9.47.5 #> R version used for fitting: 3.5.1 -#> Date of fit: Fri Sep 14 16:53:43 2018 -#> Date of summary: Fri Sep 14 16:53:43 2018 +#> Date of fit: Fri Sep 14 17:41:57 2018 +#> Date of summary: Fri Sep 14 17:41:57 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -872,7 +872,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 155 model solutions performed in 0.643 s +#> Fitted with method Port using 155 model solutions performed in 0.692 s #> #> Weighting: mean #> @@ -981,8 +981,8 @@ quiet = TRUE) summary(f.w.value)
#> mkin version used for fitting: 0.9.47.5 #> R version used for fitting: 3.5.1 -#> Date of fit: Fri Sep 14 16:53:44 2018 -#> Date of summary: Fri Sep 14 16:53:44 2018 +#> Date of fit: Fri Sep 14 17:41:58 2018 +#> Date of summary: Fri Sep 14 17:41:58 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -990,7 +990,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 174 model solutions performed in 0.722 s +#> Fitted with method Port using 174 model solutions performed in 0.749 s #> #> Weighting: manual #> @@ -1101,8 +1101,8 @@ f.w.man <- mkinfit(SFO_SFO.ff, dw, err = "err.man", quiet = TRUE) summary(f.w.man)
#> mkin version used for fitting: 0.9.47.5 #> R version used for fitting: 3.5.1 -#> Date of fit: Fri Sep 14 16:53:45 2018 -#> Date of summary: Fri Sep 14 16:53:45 2018 +#> Date of fit: Fri Sep 14 17:41:59 2018 +#> Date of summary: Fri Sep 14 17:41:59 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1110,7 +1110,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 270 model solutions performed in 1.11 s +#> Fitted with method Port using 270 model solutions performed in 1.155 s #> #> Weighting: manual #> @@ -1219,8 +1219,8 @@ reweight.method = "obs") summary(f.w.man.irls)
#> mkin version used for fitting: 0.9.47.5 #> R version used for fitting: 3.5.1 -#> Date of fit: Fri Sep 14 16:53:49 2018 -#> Date of summary: Fri Sep 14 16:53:49 2018 +#> Date of fit: Fri Sep 14 17:42:03 2018 +#> Date of summary: Fri Sep 14 17:42:03 2018 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1228,7 +1228,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 692 model solutions performed in 2.945 s +#> Fitted with method Port using 692 model solutions performed in 3.154 s #> #> Weighting: manual #> -- cgit v1.2.1