From d852e9e000f57f280deb84611ae1af58daa883cc Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 18 Nov 2016 23:08:45 +0100 Subject: Fix links in README, configure navbar, rebuild docs --- docs/reference/mkinfit.html | 48 ++++++++++++++++++++++----------------------- 1 file changed, 24 insertions(+), 24 deletions(-) (limited to 'docs/reference/mkinfit.html') diff --git a/docs/reference/mkinfit.html b/docs/reference/mkinfit.html index a912b065..2f32348e 100644 --- a/docs/reference/mkinfit.html +++ b/docs/reference/mkinfit.html @@ -49,7 +49,7 @@
mkinsub("SFO"))
#> Successfully compiled differential equation model from auto-generated C code.
# Fit the model to the FOCUS example dataset D using defaults print(system.time(fit <- mkinfit(SFO_SFO, FOCUS_2006_D, solution_type = "eigen", quiet = TRUE)))
#> user system elapsed -#> 1.220 1.216 0.920
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 1.244 1.176 0.911
coef(fit)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -528,7 +528,7 @@ #> Model cost at call 152 : 371.2134 #> Optimisation by method Port successfully terminated. #> user system elapsed -#> 0.724 0.048 0.722
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink +#> 0.724 0.040 0.713
coef(fit.deSolve)
#> parent_0 log_k_parent_sink log_k_parent_m1 log_k_m1_sink #> 99.59848 -3.03822 -2.98030 -5.24750
endpoints(fit.deSolve)
#> $ff #> parent_sink parent_m1 m1_sink #> 0.485524 0.514476 1.000000 @@ -571,8 +571,8 @@ m1 = mkinsub("SFO"), use_of_ff = "max")
#> Successfully compiled differential equation model from auto-generated C code.
f.noweight <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, quiet = TRUE) summary(f.noweight)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 16:45:50 2016 -#> Date of summary: Fri Nov 18 16:45:50 2016 +#> Date of fit: Fri Nov 18 22:52:29 2016 +#> Date of summary: Fri Nov 18 22:52:29 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -580,7 +580,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 185 model solutions performed in 0.872 s +#> Fitted with method Port using 185 model solutions performed in 0.757 s #> #> Weighting: none #> @@ -692,8 +692,8 @@ #> 120 m1 33.31 2.879e+01 4.520e+00
f.irls <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, reweight.method = "obs", quiet = TRUE) summary(f.irls)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 16:45:52 2016 -#> Date of summary: Fri Nov 18 16:45:52 2016 +#> Date of fit: Fri Nov 18 22:52:31 2016 +#> Date of summary: Fri Nov 18 22:52:31 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -701,7 +701,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 486 model solutions performed in 2.009 s +#> Fitted with method Port using 486 model solutions performed in 2.046 s #> #> Weighting: none then iterative reweighting method obs #> @@ -813,8 +813,8 @@ #> 120 m1 33.31 2.881e+01 4.501e+00 2.722
f.w.mean <- mkinfit(SFO_SFO.ff, FOCUS_2006_D, weight = "mean", quiet = TRUE) summary(f.w.mean)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 16:45:53 2016 -#> Date of summary: Fri Nov 18 16:45:53 2016 +#> Date of fit: Fri Nov 18 22:52:32 2016 +#> Date of summary: Fri Nov 18 22:52:32 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -822,7 +822,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 155 model solutions performed in 0.647 s +#> Fitted with method Port using 155 model solutions performed in 0.64 s #> #> Weighting: mean #> @@ -935,8 +935,8 @@ quiet = TRUE) summary(f.w.value)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 16:45:54 2016 -#> Date of summary: Fri Nov 18 16:45:54 2016 +#> Date of fit: Fri Nov 18 22:52:33 2016 +#> Date of summary: Fri Nov 18 22:52:33 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -944,7 +944,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 174 model solutions performed in 0.749 s +#> Fitted with method Port using 174 model solutions performed in 0.752 s #> #> Weighting: manual #> @@ -1057,8 +1057,8 @@ f.w.man <- mkinfit(SFO_SFO.ff, dw, err = "err.man", quiet = TRUE) summary(f.w.man)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 16:45:55 2016 -#> Date of summary: Fri Nov 18 16:45:55 2016 +#> Date of fit: Fri Nov 18 22:52:34 2016 +#> Date of summary: Fri Nov 18 22:52:34 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1066,7 +1066,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 316 model solutions performed in 1.288 s +#> Fitted with method Port using 316 model solutions performed in 1.28 s #> #> Weighting: manual #> @@ -1179,8 +1179,8 @@ reweight.method = "obs") summary(f.w.man.irls)
#> mkin version: 0.9.44.9000 #> R version: 3.3.2 -#> Date of fit: Fri Nov 18 16:45:58 2016 -#> Date of summary: Fri Nov 18 16:45:58 2016 +#> Date of fit: Fri Nov 18 22:52:37 2016 +#> Date of summary: Fri Nov 18 22:52:37 2016 #> #> Equations: #> d_parent/dt = - k_parent * parent @@ -1188,7 +1188,7 @@ #> #> Model predictions using solution type deSolve #> -#> Fitted with method Port using 648 model solutions performed in 2.738 s +#> Fitted with method Port using 648 model solutions performed in 2.631 s #> #> Weighting: manual then iterative reweighting method obs #> -- cgit v1.2.1