From 6653ff2507f45eae909f491a9af3f1eb5358a600 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 1 Mar 2018 14:32:46 +0100 Subject: Static documentation rebuilt using current pkgdown::build_site() --- docs/reference/mkinmod.html | 58 +++++++++++++++++++-------------------------- 1 file changed, 25 insertions(+), 33 deletions(-) (limited to 'docs/reference/mkinmod.html') diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html index 5703b188..c1287905 100644 --- a/docs/reference/mkinmod.html +++ b/docs/reference/mkinmod.html @@ -18,12 +18,24 @@ + + + + + + + @@ -69,6 +81,9 @@
  • Example evaluation of FOCUS Laboratory Data L1 to L3
    • +
  • + Example evaluation of FOCUS Example Dataset Z +
  • Performance benefit by using compiled model definitions in mkin
    • @@ -83,12 +98,7 @@ @@ -182,7 +192,7 @@ Degradation Kinetics from Environmental Fate Studies on Pesticides in EU Registration” Report of the FOCUS Work Group on Degradation Kinetics, EC Document Reference Sanco/10058/2005 version 2.0, 434 pp, - http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics

    + http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics

    NAFTA Technical Working Group on Pesticides (not dated) Guidance for Evaluating and Calculating Degradation Kinetics in Environmental Media

    @@ -196,36 +206,17 @@ SFO_SFO <- mkinmod( parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))
    #> Successfully compiled differential equation model from auto-generated C code.
    - +
    # NOT RUN { # The above model used to be specified like this, before the advent of mkinsub() SFO_SFO <- mkinmod( parent = list(type = "SFO", to = "m1"), - m1 = list(type = "SFO"))
    #> Successfully compiled differential equation model from auto-generated C code.
    + m1 = list(type = "SFO")) + # Show details of creating the C function SFO_SFO <- mkinmod( parent = mkinsub("SFO", "m1"), - m1 = mkinsub("SFO"), verbose = TRUE)
    #> Compilation argument: -#> /usr/lib/R/bin/R CMD SHLIB file519167a14b3a.c 2> file519167a14b3a.c.err.txt -#> Program source: -#> 1: #include <R.h> -#> 2: -#> 3: -#> 4: static double parms [3]; -#> 5: #define k_parent_sink parms[0] -#> 6: #define k_parent_m1 parms[1] -#> 7: #define k_m1_sink parms[2] -#> 8: -#> 9: void initpar(void (* odeparms)(int *, double *)) { -#> 10: int N = 3; -#> 11: odeparms(&N, parms); -#> 12: } -#> 13: -#> 14: -#> 15: void func ( int * n, double * t, double * y, double * f, double * rpar, int * ipar ) { -#> 16: -#> 17: f[0] = - k_parent_sink * y[0] - k_parent_m1 * y[0]; -#> 18: f[1] = + k_parent_m1 * y[0] - k_m1_sink * y[1]; -#> 19: }
    #> Successfully compiled differential equation model from auto-generated C code.
    + m1 = mkinsub("SFO"), verbose = TRUE) + # If we have several parallel metabolites # (compare tests/testthat/test_synthetic_data_for_UBA_2014.R) m_synth_DFOP_par <- mkinmod(parent = mkinsub("DFOP", c("M1", "M2")), @@ -235,7 +226,8 @@ fit_DFOP_par_c <- mkinfit(m_synth_DFOP_par, synthetic_data_for_UBA_2014[[12]]$data, - quiet = TRUE)
    + quiet = TRUE) +# }
    -

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    +

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